C3H34_ARATH
ID C3H34_ARATH Reviewed; 462 AA.
AC Q9SQU4; Q0WKX1; Q0WL94;
DT 26-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT 26-JUN-2007, sequence version 2.
DT 03-AUG-2022, entry version 118.
DE RecName: Full=Zinc finger CCCH domain-containing protein 34;
DE Short=AtC3H34;
DE AltName: Full=Zinc finger CCCH domain-containing protein ZFN-like 2;
GN OrderedLocusNames=At3g06410; ORFNames=F24P17.12;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF08587.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC011623; AAF08587.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE74389.1; -; Genomic_DNA.
DR EMBL; AK230312; BAF02113.1; -; mRNA.
DR EMBL; AK230438; BAF02236.1; -; mRNA.
DR RefSeq; NP_187292.2; NM_111516.5.
DR AlphaFoldDB; Q9SQU4; -.
DR BioGRID; 5150; 3.
DR IntAct; Q9SQU4; 3.
DR STRING; 3702.AT3G06410.1; -.
DR PaxDb; Q9SQU4; -.
DR PRIDE; Q9SQU4; -.
DR ProteomicsDB; 239160; -.
DR EnsemblPlants; AT3G06410.1; AT3G06410.1; AT3G06410.
DR GeneID; 819815; -.
DR Gramene; AT3G06410.1; AT3G06410.1; AT3G06410.
DR KEGG; ath:AT3G06410; -.
DR Araport; AT3G06410; -.
DR TAIR; locus:2081066; AT3G06410.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_033292_1_0_1; -.
DR InParanoid; Q9SQU4; -.
DR OMA; LEWTSHG; -.
DR OrthoDB; 749641at2759; -.
DR PhylomeDB; Q9SQU4; -.
DR PRO; PR:Q9SQU4; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SQU4; baseline and differential.
DR Genevisible; Q9SQU4; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00642; zf-CCCH; 5.
DR SMART; SM00356; ZnF_C3H1; 5.
DR SUPFAM; SSF90229; SSF90229; 5.
DR PROSITE; PS50103; ZF_C3H1; 5.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Repeat; Zinc;
KW Zinc-finger.
FT CHAIN 1..462
FT /note="Zinc finger CCCH domain-containing protein 34"
FT /id="PRO_0000213916"
FT ZN_FING 54..82
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 100..128
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 148..176
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 307..335
FT /note="C3H1-type 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 353..381
FT /note="C3H1-type 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 288..310
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 405..462
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 288..307
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 460
FT /note="T -> A (in Ref. 3; BAF02113)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 462 AA; 48852 MW; EB5A66BFF6535AAF CRC64;
MERYGRPGEE GSRSDPSLEW TSHGGETAVE APMWRLGLSG GGGGGGGGES YPERPDEPDC
IYYLRTGVCG YGSRCRFNHP RDRGAVIGGV RGEAGALPER MGHPVCQHFM RTGTCKFGAS
CKYHHPRQGG GGGSVAPVSL SYLGYPLRPG EKECSYYLRT GQCKFGLTCR FNHPVPLAVQ
GPPQQPQQQQ PQPQPQLQTI YPTLQSQSIP SSQQYGLVLT RPSFLTGSYL QSPYGPPMVL
PPGMVPYSGW NPYQASLSAM PSPGTQPSIG SSSIYGLTPL SPSATAYTGT YQSVPSSNST
SKEFPQRPDQ PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGIVLSSIGL PLRPGVAQCT
HFAQHGICKF GPACKFDHSM SSSLSYSPSA SSLTDMPVAP YPIGSSSLSG SSAPVSSSNE
PTKEAVTPAV SSMVSGLSRP EPAETSGDSA SVSGSIEAKT SS
