C3H35_ORYSJ
ID C3H35_ORYSJ Reviewed; 402 AA.
AC Q6L4N4; A0A0P0WJ25;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=Zinc finger CCCH domain-containing protein 35;
DE Short=OsC3H35;
DE AltName: Full=Protein DELAY OF THE ONSET OF SENESCENCE-like;
GN OrderedLocusNames=Os05g0195200, LOC_Os05g10670; ORFNames=P0473H02.8;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AC132486; AAT38071.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF16775.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS92668.1; -; Genomic_DNA.
DR EMBL; AK106392; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015640763.1; XM_015785277.1.
DR AlphaFoldDB; Q6L4N4; -.
DR STRING; 4530.OS05T0195200-01; -.
DR PaxDb; Q6L4N4; -.
DR PRIDE; Q6L4N4; -.
DR EnsemblPlants; Os05t0195200-01; Os05t0195200-01; Os05g0195200.
DR GeneID; 4338037; -.
DR Gramene; Os05t0195200-01; Os05t0195200-01; Os05g0195200.
DR KEGG; osa:4338037; -.
DR eggNOG; KOG1595; Eukaryota.
DR HOGENOM; CLU_044407_0_0_1; -.
DR InParanoid; Q6L4N4; -.
DR OMA; SEREPNC; -.
DR OrthoDB; 1188286at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR Genevisible; Q6L4N4; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR045234; Unkempt-like.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR14493; PTHR14493; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..402
FT /note="Zinc finger CCCH domain-containing protein 35"
FT /id="PRO_0000346830"
FT ZN_FING 117..144
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 152..176
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 180..211
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 232..258
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 402 AA; 42717 MW; 9F7B4D56F84D0EE4 CRC64;
MMMMGEGAHA PPWQQHVASP VSGVEGGGGR ESEVVAAPYH LLDTLRHYLP SNEAAAAEDE
EEAAAVAAAV DAYACDEFRM YEFKVRRCAR GRSHDWTECP FAHPGEKARR RDPRRYCYSG
TACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRV
LPPSQQQGSN SPRGCGGGGA GAAASPLAES YDGSPLRRQA FESYLTKSIM SSSPTSTLVS
PPRSPPSESP PLSPDAAGAL RRGAWAGVGS PVNDVHVSLR QLRLGSPRSA PSCASFLPAG
YQYGSPKSPA AAAAAALYSL PSTPTRLSPV TVTTASGATV TVEPLDLGLI EEEQPMERVE
SGRALREKVF ERLSKEATVS TDAAAAAAGV APDVGWVSDL IN