C3H37_ORYSJ
ID C3H37_ORYSJ Reviewed; 255 AA.
AC Q65X92;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 25-OCT-2004, sequence version 1.
DT 03-AUG-2022, entry version 84.
DE RecName: Full=Zinc finger CCCH domain-containing protein 37;
DE Short=OsC3H37;
GN OrderedLocusNames=Os05g0525900, LOC_Os05g45020; ORFNames=OJ1593_C11.10;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AC109596; AAU44059.1; -; Genomic_DNA.
DR EMBL; AP008211; BAF18013.1; -; Genomic_DNA.
DR EMBL; AP014961; BAS94987.1; -; Genomic_DNA.
DR EMBL; AK108249; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015637897.1; XM_015782411.1.
DR AlphaFoldDB; Q65X92; -.
DR STRING; 4530.OS05T0525900-01; -.
DR PaxDb; Q65X92; -.
DR PRIDE; Q65X92; -.
DR EnsemblPlants; Os05t0525900-01; Os05t0525900-01; Os05g0525900.
DR GeneID; 4339379; -.
DR Gramene; Os05t0525900-01; Os05t0525900-01; Os05g0525900.
DR KEGG; osa:4339379; -.
DR eggNOG; KOG1595; Eukaryota.
DR HOGENOM; CLU_044407_1_0_1; -.
DR InParanoid; Q65X92; -.
DR OMA; MDECDAD; -.
DR OrthoDB; 720138at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR ExpressionAtlas; Q65X92; baseline and differential.
DR Genevisible; Q65X92; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR045234; Unkempt-like.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR14493; PTHR14493; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..255
FT /note="Zinc finger CCCH domain-containing protein 37"
FT /id="PRO_0000346832"
FT ZN_FING 98..128
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 137..159
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
SQ SEQUENCE 255 AA; 28258 MW; FA3864F6665AA950 CRC64;
MASREHLLLD PAALAVSWAD PAAVEIPPEL LAALGEYLSA RRSDGEAEAD AEAEADDEFM
MYEFKVRRCA RARSHDWTAC PYAHPGEAAR RRDPRRVAYT GEPCPDFRRR PGAACPRGST
CPFAHGTFEL WLHPSRYRTR PCRAGVACRR RVCFFAHTAG ELRAGSKEDS PLSLSPKSTL
ASLWESPPVS PVEGRRWVDG IDECDADAEM EELMFAMREL GLRKVRPSAS SVTPVLPPVT
DEDGPDFGWV SELVM
