C3H38_ARATH
ID C3H38_ARATH Reviewed; 676 AA.
AC Q9LIH5; A0A1I9LRB7; Q56XB6;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 118.
DE RecName: Full=Zinc finger CCCH domain-containing protein 38;
DE Short=AtC3H38;
GN OrderedLocusNames=At3g18640; ORFNames=K24M9.13;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10907853; DOI=10.1093/dnares/7.3.217;
RA Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
RT features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC
RT clones.";
RL DNA Res. 7:217-221(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AP001303; BAB02222.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76125.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65125.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65126.1; -; Genomic_DNA.
DR EMBL; AK175797; BAD43560.1; -; mRNA.
DR EMBL; AK221759; BAD93829.1; -; mRNA.
DR RefSeq; NP_001327119.1; NM_001338349.1.
DR RefSeq; NP_001327120.1; NM_001338350.1.
DR RefSeq; NP_188494.1; NM_112750.3.
DR AlphaFoldDB; Q9LIH5; -.
DR SMR; Q9LIH5; -.
DR BioGRID; 6728; 2.
DR IntAct; Q9LIH5; 2.
DR iPTMnet; Q9LIH5; -.
DR PaxDb; Q9LIH5; -.
DR PRIDE; Q9LIH5; -.
DR ProteomicsDB; 240301; -.
DR EnsemblPlants; AT3G18640.1; AT3G18640.1; AT3G18640.
DR EnsemblPlants; AT3G18640.2; AT3G18640.2; AT3G18640.
DR EnsemblPlants; AT3G18640.3; AT3G18640.3; AT3G18640.
DR GeneID; 821395; -.
DR Gramene; AT3G18640.1; AT3G18640.1; AT3G18640.
DR Gramene; AT3G18640.2; AT3G18640.2; AT3G18640.
DR Gramene; AT3G18640.3; AT3G18640.3; AT3G18640.
DR KEGG; ath:AT3G18640; -.
DR Araport; AT3G18640; -.
DR TAIR; locus:2086914; AT3G18640.
DR eggNOG; ENOG502QQ0W; Eukaryota.
DR HOGENOM; CLU_417606_0_0_1; -.
DR InParanoid; Q9LIH5; -.
DR OMA; RETRYHH; -.
DR OrthoDB; 665539at2759; -.
DR PhylomeDB; Q9LIH5; -.
DR PRO; PR:Q9LIH5; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LIH5; baseline and differential.
DR Genevisible; Q9LIH5; AT.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR000571; Znf_CCCH.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..676
FT /note="Zinc finger CCCH domain-containing protein 38"
FT /id="PRO_0000371993"
FT ZN_FING 214..243
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..134
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 172..217
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 245..307
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 487..506
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 533..594
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..25
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 50..94
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 97..111
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 181..210
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 248..267
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 293..307
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 535..566
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 567..582
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 676 AA; 75581 MW; 7BA228F6014DFC11 CRC64;
MEMSGLGRKR VSKWDSKEDT HHHHSSVNAN SASYYRDKES EPVRFNAESN GEARTRSRVS
QNNDNSYFSE QDGTRQQFVR RSGSRSNSRS RSRSRSPVYR ARRDAGSYDR HKTRTQVSPT
PIREFNKRGS DHLFDQSRSD HYGWEDNIRK PRETKYHTDD FREEAMMEGA RSSDYNNTDY
PEDNSRIRRR RSEFTGEKET QRRDGGDGEG GFHRSSNIPC KFFAAGTGFC RNGKYCRFSH
HVADRKQPQD NNNNFYRQDN NNHTSGHNKW NDVERLDNGR VGGIEVSRAS KKGVSESKGN
GSSSWIDDME MSPDWNYGVQ ALKKPVKEDH SVGIIGQSSQ SRVLKDDQRS SGMFSHGGRT
MAEKPVAASH QSYSNSVNVA PVETFNQNHN ALPYQSSLTA GGSQQVLAAA ATNFSVGSNL
SNLESGKVYQ DNHHSTVEKP VLVQNTVSRE QIDQITNISA SLAQFLANGQ PIPQLEQALQ
LPLHSESVQP NQATTQSNVV SSNPNQLWGL GMSTGAEGVP AVTASKISNV EEIQEVSLDP
KENGDKKTDE ASKEEEGKKT GEDTNDAENV VDEDEDGDDD GSDEENKKEK DPKGMRAFKF
ALVEVVKELL KPAWKEGKLN KDGYKNIVKK VAEKVTGTMQ SGNVPQTQEK IDHYLSASKP
KLTKLVQAYV GKIKKT
