C3H39_ARATH
ID C3H39_ARATH Reviewed; 386 AA.
AC Q9LT81;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 119.
DE RecName: Full=Zinc finger CCCH domain-containing protein 39;
DE Short=AtC3H39;
GN OrderedLocusNames=At3g19360; ORFNames=MLD14.9;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AB025624; BAB02460.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76229.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM65744.1; -; Genomic_DNA.
DR EMBL; AY037226; AAK59826.1; -; mRNA.
DR EMBL; AY081745; AAL87398.1; -; mRNA.
DR RefSeq; NP_001327691.1; NM_001338393.1.
DR RefSeq; NP_566631.1; NM_112823.4.
DR AlphaFoldDB; Q9LT81; -.
DR BioGRID; 6803; 1.
DR IntAct; Q9LT81; 1.
DR STRING; 3702.AT3G19360.1; -.
DR PaxDb; Q9LT81; -.
DR PRIDE; Q9LT81; -.
DR ProteomicsDB; 240386; -.
DR EnsemblPlants; AT3G19360.1; AT3G19360.1; AT3G19360.
DR EnsemblPlants; AT3G19360.2; AT3G19360.2; AT3G19360.
DR GeneID; 821470; -.
DR Gramene; AT3G19360.1; AT3G19360.1; AT3G19360.
DR Gramene; AT3G19360.2; AT3G19360.2; AT3G19360.
DR KEGG; ath:AT3G19360; -.
DR Araport; AT3G19360; -.
DR TAIR; locus:2090669; AT3G19360.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_060653_0_0_1; -.
DR InParanoid; Q9LT81; -.
DR OMA; NTSWNVP; -.
DR OrthoDB; 954544at2759; -.
DR PhylomeDB; Q9LT81; -.
DR PRO; PR:Q9LT81; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LT81; baseline and differential.
DR Genevisible; Q9LT81; AT.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR InterPro; IPR045877; ZFP36-like.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR12547; PTHR12547; 1.
DR Pfam; PF00642; zf-CCCH; 2.
DR SMART; SM00356; ZnF_C3H1; 3.
DR SUPFAM; SSF90229; SSF90229; 3.
DR PROSITE; PS50103; ZF_C3H1; 3.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..386
FT /note="Zinc finger CCCH domain-containing protein 39"
FT /id="PRO_0000371994"
FT ZN_FING 104..131
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 183..211
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 269..297
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..90
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 136..166
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..58
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 72..86
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 149..166
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 386 AA; 43121 MW; 753E5B04E09C1BAD CRC64;
MDSSYSDSRP MFVQSPYGGW NQTQMIDSMA NPMNNEQGDL HSLSESQSQS QPSQQLQPAL
KRPRLVDDNL FNPASSFPQP SSSNPWMVPS LNPPPVNKGT ANIFYKTRMC AKFRAGTCRN
GELCNFAHGI EDLRQPPSNW QEIVGPPPAG QDRERERERE RERERPSLAP VVNNNWEDDQ
KIILRMKLCR KFCFGEECPY GDRCNFIHED LSKFREDSGK LRESSVISVG ATAADQPSDT
ASNLIEVNRQ GSIPVPAPMN NGGVVKTVYW KTRLCMKFDI TGQCPFGDKC HFAHGQAELH
NSVGRVEGEA MNAVASVNKQ AVVPANEAFA MKPITQVTAD SSGLNEEGRR KKCLLKWSDS
KKINRIYGDW IDDLPVGQKS TKPVES
