C3H41_ARATH
ID C3H41_ARATH Reviewed; 908 AA.
AC Q9LVX1; Q0WMA1; Q8W4G4;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 25-MAY-2022, entry version 137.
DE RecName: Full=Zinc finger CCCH domain-containing protein 41;
DE Short=AtC3H41;
GN OrderedLocusNames=At3g27700; ORFNames=MGF10.11;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 677-908.
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
RN [6]
RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-657, AND IDENTIFICATION BY
RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX PubMed=19376835; DOI=10.1104/pp.109.138677;
RA Reiland S., Messerli G., Baerenfaller K., Gerrits B., Endler A.,
RA Grossmann J., Gruissem W., Baginsky S.;
RT "Large-scale Arabidopsis phosphoproteome profiling reveals novel
RT chloroplast kinase substrates and phosphorylation networks.";
RL Plant Physiol. 150:889-903(2009).
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DR EMBL; AB018114; BAB02694.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77353.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE77354.1; -; Genomic_DNA.
DR EMBL; AY062574; AAL32652.1; -; mRNA.
DR EMBL; BT000780; AAN31919.1; -; mRNA.
DR EMBL; AK229929; BAF01755.1; -; mRNA.
DR RefSeq; NP_189407.2; NM_113686.3.
DR RefSeq; NP_851008.1; NM_180677.2.
DR AlphaFoldDB; Q9LVX1; -.
DR SMR; Q9LVX1; -.
DR STRING; 3702.AT3G27700.1; -.
DR iPTMnet; Q9LVX1; -.
DR MetOSite; Q9LVX1; -.
DR PaxDb; Q9LVX1; -.
DR PRIDE; Q9LVX1; -.
DR ProteomicsDB; 239165; -.
DR EnsemblPlants; AT3G27700.1; AT3G27700.1; AT3G27700.
DR EnsemblPlants; AT3G27700.2; AT3G27700.2; AT3G27700.
DR GeneID; 822392; -.
DR Gramene; AT3G27700.1; AT3G27700.1; AT3G27700.
DR Gramene; AT3G27700.2; AT3G27700.2; AT3G27700.
DR KEGG; ath:AT3G27700; -.
DR Araport; AT3G27700; -.
DR TAIR; locus:2089094; AT3G27700.
DR eggNOG; KOG2135; Eukaryota.
DR HOGENOM; CLU_011820_0_0_1; -.
DR InParanoid; Q9LVX1; -.
DR OMA; CPMEHGL; -.
DR OrthoDB; 241680at2759; -.
DR PhylomeDB; Q9LVX1; -.
DR PRO; PR:Q9LVX1; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LVX1; baseline and differential.
DR Genevisible; Q9LVX1; AT.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR Gene3D; 3.30.70.330; -; 2.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR045137; RBM26/27.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR14398; PTHR14398; 1.
DR Pfam; PF00076; RRM_1; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 1: Evidence at protein level;
KW Coiled coil; DNA-binding; Metal-binding; Phosphoprotein;
KW Reference proteome; RNA-binding; Zinc; Zinc-finger.
FT CHAIN 1..908
FT /note="Zinc finger CCCH domain-containing protein 41"
FT /id="PRO_0000371996"
FT DOMAIN 438..510
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT ZN_FING 200..228
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..124
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 333..375
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 558..590
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 629..695
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 807..908
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 587..630
FT /evidence="ECO:0000255"
FT COMPBIAS 32..51
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 63..79
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 80..105
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 351..375
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 558..587
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 629..646
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 676..695
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 807..864
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 865..884
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MOD_RES 657
FT /note="Phosphoserine"
FT /evidence="ECO:0007744|PubMed:19376835"
FT CONFLICT 249
FT /note="G -> D (in Ref. 3; AAL32652)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 908 AA; 99228 MW; 3FD388AC7093F72C CRC64;
MELSVSSPKQ SVLSPPDCMS DPEEEHEISE EEDDDRNHKH RRKEETRSQS LEQDSSDQAF
SRPYRKNYRH YENGNSFSEH EKRSFGTGSG QRVQFDNQRM RSNPMFSRDS GPGRGRGNYG
SWAQRDSRFN PVDLSSHMVQ VGSMGQGMFG GRGLAGVSAA QSAPWPPFGM IPGVPNGGLD
GFHHLQGSLR PPLNAPLNMG IPRQRCRDFE ERGFCLRGDM CPMEHGMNRI VVDDVQSLSQ
FNLPVSVPGA PHLAASSKQV PAQFGGASFM NPKGAHGRTN EGGMAVDGLG YGDAYPSAGG
TDFYDPDQPL WNNSTGETSG AISTLNSHGV DENVAPLDDS NQDAAENGCG IRDSRSTSQS
VWGRMKGSNS QANSKEKADA VLNSSAVPED QLKEVSVNSS RHGKQNHVGE SVAKVVDSSN
ISNDMMNNTR KPTQKAMRTL FVNYVPHESN RRDLILAHFQ KFGKVIDIHI PVNSERAFVQ
FSKREEAESA LRAPDAVMGN RFIKLWWANR DSIPDNGLST GSGASMKGRS MTASGAQNQF
PIAAASKSNH VSSIAKVPTF QTGGAPSSSE QPKPVVVTTS GPKVTPLQQK KADTLERLKE
TLRKKQEMLE QKRNEYRKKL ATLEKQGTVV KREEADEPDA KRVKLDTASD SGAAIASPKT
ESSTDKKVPI LKPLSTAKLS TETPSPDSKN FKQRPYSFTT SLNAPMVNRY KLDNRTTTIK
VVPPLPTGLA DVAVVKEHFS SYGEVSKVEL EDNASIDSGK DHETQNESRA ACVTFVKRSA
AEKAFANAKC WQEHTLQLVW VTRQSNRESN NNNNNSNSLS VSRDNLSSKN KCASVSNDPK
PAVEVKTSST EEPENTNVSG DNDSTLDKQE TKESDNDNNK SNHESIEGAS EVIATAGTDE
EQSEQIHQ
