ID   C3H42_ORYSJ             Reviewed;         279 AA.
AC   Q0DBW8; A0A0P0WX58;
DT   02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT   17-OCT-2006, sequence version 1.
DT   03-AUG-2022, entry version 70.
DE   RecName: Full=Zinc finger CCCH domain-containing protein 42;
DE            Short=OsC3H42;
GN   OrderedLocusNames=Os06g0519400, LOC_Os06g32720;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [5]
RP   NOMENCLATURE.
RX   PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA   Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT   "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL   BMC Genomics 9:44-44(2008).
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AK119453; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305};
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DR   EMBL; AP008212; BAF19655.1; -; Genomic_DNA.
DR   EMBL; AP014962; BAS98000.1; -; Genomic_DNA.
DR   EMBL; AK119453; -; NOT_ANNOTATED_CDS; mRNA.
DR   AlphaFoldDB; Q0DBW8; -.
DR   STRING; 4530.OS06T0519400-01; -.
DR   PaxDb; Q0DBW8; -.
DR   PRIDE; Q0DBW8; -.
DR   EnsemblPlants; Os06t0519400-01; Os06t0519400-01; Os06g0519400.
DR   Gramene; Os06t0519400-01; Os06t0519400-01; Os06g0519400.
DR   eggNOG; KOG1677; Eukaryota.
DR   HOGENOM; CLU_984780_0_0_1; -.
DR   InParanoid; Q0DBW8; -.
DR   OMA; WCDPELA; -.
DR   Proteomes; UP000000763; Chromosome 6.
DR   Proteomes; UP000059680; Chromosome 6.
DR   Genevisible; Q0DBW8; OS.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   InterPro; IPR000571; Znf_CCCH.
DR   InterPro; IPR036855; Znf_CCCH_sf.
DR   Pfam; PF00642; zf-CCCH; 3.
DR   SMART; SM00356; ZnF_C3H1; 3.
DR   SUPFAM; SSF90229; SSF90229; 2.
DR   PROSITE; PS50103; ZF_C3H1; 3.
PE   2: Evidence at transcript level;
KW   DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT   CHAIN           1..279
FT                   /note="Zinc finger CCCH domain-containing protein 42"
FT                   /id="PRO_0000346836"
FT   ZN_FING         79..107
FT                   /note="C3H1-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT   ZN_FING         120..148
FT                   /note="C3H1-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT   ZN_FING         186..214
FT                   /note="C3H1-type 3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT   REGION          11..77
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        11..65
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   279 AA;  31059 MW;  99E180C572B54031 CRC64;
     MMQILCECCN SDHRSSSTPM ATTTSSSASD PAAISPTPSQ QHASSTVKTL DDRRPAGTSS
     SAGETEPKAA VEPQEYPRRP GVPDCSYYVE FGSCKFGMRC LYNHPAKHAG GCDKLEHPQR
     PGEHDCLHYL RFGRCKYGMN CRFNHPPDRL PQQQVYFPWK ACHCHHSEGK SEAEHVKLNF
     LGLPLRPGTG LCSYYMNRGI CKFGSNCKFH HPNSGSGHEK WDGSLQTNQI SSGVNIYSVL
     DHGELNEQPV PSKDDFQVSF VQNIVGFNFY IWCDPELAP