C3H43_ARATH
ID C3H43_ARATH Reviewed; 448 AA.
AC Q9STM4; B4F7Q6;
DT 26-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 120.
DE RecName: Full=Zinc finger CCCH domain-containing protein 43;
DE Short=AtC3H43;
DE AltName: Full=Zinc finger CCCH domain-containing protein ZFN-like 6;
GN OrderedLocusNames=At3g48440; ORFNames=T29H11.40;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA De Los Reyes C., Quan R., Chen H., Bautista V.R., Kim C.J., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
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DR EMBL; AL049659; CAB41154.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE78417.1; -; Genomic_DNA.
DR EMBL; BT033139; ACF37203.1; -; mRNA.
DR PIR; T06698; T06698.
DR RefSeq; NP_190414.1; NM_114703.2.
DR AlphaFoldDB; Q9STM4; -.
DR STRING; 3702.AT3G48440.1; -.
DR iPTMnet; Q9STM4; -.
DR PaxDb; Q9STM4; -.
DR PRIDE; Q9STM4; -.
DR ProteomicsDB; 240263; -.
DR EnsemblPlants; AT3G48440.1; AT3G48440.1; AT3G48440.
DR GeneID; 824003; -.
DR Gramene; AT3G48440.1; AT3G48440.1; AT3G48440.
DR KEGG; ath:AT3G48440; -.
DR Araport; AT3G48440; -.
DR TAIR; locus:2101170; AT3G48440.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_033292_3_1_1; -.
DR InParanoid; Q9STM4; -.
DR OMA; NASIWPD; -.
DR OrthoDB; 809368at2759; -.
DR PhylomeDB; Q9STM4; -.
DR PRO; PR:Q9STM4; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9STM4; baseline and differential.
DR Genevisible; Q9STM4; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00642; zf-CCCH; 5.
DR SMART; SM00356; ZnF_C3H1; 5.
DR SUPFAM; SSF90229; SSF90229; 5.
DR PROSITE; PS50103; ZF_C3H1; 5.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Repeat; Zinc;
KW Zinc-finger.
FT CHAIN 1..448
FT /note="Zinc finger CCCH domain-containing protein 43"
FT /id="PRO_0000213920"
FT ZN_FING 110..138
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 158..186
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 204..232
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 346..374
FT /note="C3H1-type 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 392..420
FT /note="C3H1-type 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..106
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 424..448
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 28..49
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 50..77
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 448 AA; 49864 MW; 214E8678477B3112 CRC64;
MVNSEEIADG FEPKPVSRSY SGDSSHDRSL SDLNHAAEDL SDKLKNVGLN EVTKEQSEKM
MSVSESNGGL DSNAVVTINQ EEEEEEEDRD GYGYGDGWSE NESENVYPVR PGAEDCSFYM
RTGSCKFGSS CKFNHPLARK FQIARDNKVR EKEDDGGKLG LIDCKYYFRT GGCKYGETCR
FNHTIPKSGL ASAPELNFLG LPLRPGEVEC PYYMRNGSCK YGAECKFNHP DPTTIGGTDS
PSFRGNNGVS IGTFSPKATF QASSTSWSSP RHVNGTSPFI PVMLSQTHGV TSQNPEWNGY
QASVYSSERG VFSPSTTYLM NNSSAETSML LSQYRHQMPA EEFPERPDQP ECSYYMKTGD
CKFKFNCKYH HPKNRLPKLP PYALNDKGLP LRPDQNICTY YSRYGICKFG PACRFDHSVQ
PPYSTESSQA IVEPPQVSAN GNESDGWN
