C3H43_ORYSJ
ID C3H43_ORYSJ Reviewed; 711 AA.
AC Q5Z5Q3; A0A0P0WX39;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 25-MAY-2022, entry version 93.
DE RecName: Full=Zinc finger CCCH domain-containing protein 43;
DE Short=OsC3H43;
GN OrderedLocusNames=Os06g0520600, LOC_Os06g32860; ORFNames=OSJNBa0077L03.22;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AP005492; BAD62014.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF19656.1; -; Genomic_DNA.
DR EMBL; AP014962; BAS98003.1; -; Genomic_DNA.
DR EMBL; AK101510; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015641849.1; XM_015786363.1.
DR AlphaFoldDB; Q5Z5Q3; -.
DR SMR; Q5Z5Q3; -.
DR STRING; 4530.OS06T0520600-01; -.
DR PaxDb; Q5Z5Q3; -.
DR PRIDE; Q5Z5Q3; -.
DR EnsemblPlants; Os06t0520600-01; Os06t0520600-01; Os06g0520600.
DR GeneID; 4341164; -.
DR Gramene; Os06t0520600-01; Os06t0520600-01; Os06g0520600.
DR KEGG; osa:4341164; -.
DR eggNOG; KOG0401; Eukaryota.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_439029_0_0_1; -.
DR OMA; RMYKVKE; -.
DR OrthoDB; 594395at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q5Z5Q3; OS.
DR GO; GO:0016281; C:eukaryotic translation initiation factor 4F complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0003743; F:translation initiation factor activity; IBA:GO_Central.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR045208; IF4G.
DR InterPro; IPR003890; MIF4G-like_typ-3.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR23253; PTHR23253; 1.
DR Pfam; PF02854; MIF4G; 1.
DR Pfam; PF00642; zf-CCCH; 3.
DR SMART; SM00543; MIF4G; 1.
DR SMART; SM00356; ZnF_C3H1; 3.
DR SUPFAM; SSF48371; SSF48371; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 3.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..711
FT /note="Zinc finger CCCH domain-containing protein 43"
FT /id="PRO_0000346837"
FT DOMAIN 384..637
FT /note="MIF4G"
FT ZN_FING 44..72
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 90..118
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 157..185
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..49
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 31..48
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 466
FT /note="Q -> R (in Ref. 4; AK101510)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 711 AA; 80908 MW; 2F05890B59C9DBC2 CRC64;
MPQDDDWFWG RPTPVVVGDG ETTSKPKPPV AGKTKKVEEQ HPRRPGEPDC SYYVKFGSCK
FGISCVYNHP DPRPQHGADD KKPAEQFPRR PGEPDCSYYV KFGSCKFGMN CRFNHPPRMP
VPPQQEYFSG NACHCHHIEG KSKVEQVKLN VLGLPLRPGT GLCSYYMNRG ICKFGTNCKF
DHPDPGSDHE KWVVSSNANQ VSSQVNIYSV LDHGESNEHT FTSEEVHQPG IPSFHQRISY
TRDQLLQLCQ NVEVPKDILK FCQDINVELN GEDKISGFGA EKDHVQTPSY KRFDATDSRD
WHSWSAQTNW EQKFWDNFSE AKEPYSLGWK QEKFNKPDQS SFHFDSKDQW LKFIKCTPCK
STLIKAEVPL SIQRGIISGK DEVLKTLKSI LNTFSPKMFD LQKGQLIETR ISSADILKDV
INLIFEKVVA EPAFCSTYAQ LCTYLNQNLT PFPPEDCDCE EITFKQALSN KCQEIFESAH
TVCSEIGKLI GQDREMEQRD KERVVKLETL GNINFIRALL KKKLITNKII DHIVQAVMDC
CKFRFEPLGK VDLLNIIFEG MLDSDSAGDE SNICVNAMIG GNKSSIASND VEMTRKNVNR
QNEEAILQKS YDEVPNNKMD PQKNYADGAI SYLIEKEKPT NLESSVRICR GGCSISEIME
LVVDAGAVEG SDEHFMATLL FIKPEYREIF LTLDTREGRL GWLKRMYKVK E
