C3H44_ORYSJ
ID C3H44_ORYSJ Reviewed; 295 AA.
AC Q69XQ3; Q0DAX6;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 13-SEP-2004, sequence version 1.
DT 03-AUG-2022, entry version 92.
DE RecName: Full=Zinc finger CCCH domain-containing protein 44;
DE Short=OsC3H44;
GN OrderedLocusNames=Os06g0618100, LOC_Os06g41384; ORFNames=P0012B02.7-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF19997.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003609; BAD35424.1; -; Genomic_DNA.
DR EMBL; AP008212; BAF19997.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015641069.1; XM_015785583.1.
DR AlphaFoldDB; Q69XQ3; -.
DR SMR; Q69XQ3; -.
DR STRING; 4530.OS06T0618100-01; -.
DR PaxDb; Q69XQ3; -.
DR PRIDE; Q69XQ3; -.
DR GeneID; 4341537; -.
DR KEGG; osa:4341537; -.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_045191_0_0_1; -.
DR InParanoid; Q69XQ3; -.
DR OrthoDB; 1183911at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR Genevisible; Q69XQ3; OS.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR Gene3D; 3.30.1370.10; -; 1.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR045877; ZFP36-like.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR12547; PTHR12547; 1.
DR Pfam; PF00013; KH_1; 1.
DR Pfam; PF00642; zf-CCCH; 2.
DR SMART; SM00322; KH; 1.
DR SMART; SM00356; ZnF_C3H1; 3.
DR SUPFAM; SSF54791; SSF54791; 1.
DR SUPFAM; SSF90229; SSF90229; 3.
DR PROSITE; PS50084; KH_TYPE_1; 1.
DR PROSITE; PS50103; ZF_C3H1; 3.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; RNA-binding; Zinc;
KW Zinc-finger.
FT CHAIN 1..295
FT /note="Zinc finger CCCH domain-containing protein 44"
FT /id="PRO_0000346838"
FT DOMAIN 166..230
FT /note="KH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00117"
FT ZN_FING 32..60
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 98..126
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 259..286
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 295 AA; 30452 MW; 5C752F8A290E9C11 CRC64;
MEAGGGKRAA PEGTNGAAKR ARASESSQVG VGSKLKPCTK FFSTSGCPFG SSCHFLHNFP
GGYQAAAKMT SHGGTAVAAP PGRMPLGPGA PNGPPTSSVK TRMCNKYNTA EGCKWGSKCH
FAHGERELGK PMLLDNSMPH PMGSMPFEAP PMPGPDIVPP STFGASATAK ISVDASLAGG
IIGKGGTNTK HISRMTGAKL AIRDNESNPN LKNIELEGTF DQIKHASAMV TELIVRISGN
APPAKNPGRG SHAGGPGSNF KTKLCENFNK GSCTFGDRCH FAHGESELRK PPAAA
