C3H45_ORYSJ
ID C3H45_ORYSJ Reviewed; 665 AA.
AC Q0DA50; Q653U4;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 25-MAY-2022, entry version 86.
DE RecName: Full=Zinc finger CCCH domain-containing protein 45;
DE Short=OsC3H45;
GN OrderedLocusNames=Os06g0677700, LOC_Os06g46400;
GN ORFNames=B1153E06.24, P0710B08.18;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD45526.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD45923.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003728; BAD45526.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP004989; BAD45923.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008212; BAF20273.1; -; Genomic_DNA.
DR EMBL; AP014962; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; XP_015644405.1; XM_015788919.1.
DR AlphaFoldDB; Q0DA50; -.
DR SMR; Q0DA50; -.
DR STRING; 4530.OS06T0677700-00; -.
DR iPTMnet; Q0DA50; -.
DR PaxDb; Q0DA50; -.
DR GeneID; 4341840; -.
DR KEGG; osa:4341840; -.
DR eggNOG; KOG1040; Eukaryota.
DR eggNOG; KOG1902; Eukaryota.
DR HOGENOM; CLU_413563_0_0_1; -.
DR InParanoid; Q0DA50; -.
DR OrthoDB; 688490at2759; -.
DR Proteomes; UP000000763; Chromosome 6.
DR Proteomes; UP000059680; Chromosome 6.
DR GO; GO:0005654; C:nucleoplasm; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:1990247; F:N6-methyladenosine-containing RNA binding; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR GO; GO:0000381; P:regulation of alternative mRNA splicing, via spliceosome; IBA:GO_Central.
DR GO; GO:0048024; P:regulation of mRNA splicing, via spliceosome; IBA:GO_Central.
DR InterPro; IPR007275; YTH_domain.
DR InterPro; IPR045168; YTH_prot.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR12357; PTHR12357; 1.
DR Pfam; PF04146; YTH; 2.
DR SMART; SM00356; ZnF_C3H1; 3.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50882; YTH; 1.
DR PROSITE; PS50103; ZF_C3H1; 3.
PE 4: Predicted;
KW Coiled coil; DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc;
KW Zinc-finger.
FT CHAIN 1..665
FT /note="Zinc finger CCCH domain-containing protein 45"
FT /id="PRO_0000346839"
FT DOMAIN 260..395
FT /note="YTH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00225"
FT ZN_FING 58..85
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 86..113
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 114..139
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..55
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 167..256
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 439..469
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 561..665
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 432..459
FT /evidence="ECO:0000255"
FT COMPBIAS 167..254
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 439..453
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 579..594
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 595..617
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 618..634
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 641..665
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 665 AA; 72598 MW; C4D77C44C116050F CRC64;
MDDGDLSFDF EGGLDQPPAG GGGGPAPHSS DPGGVGGGGG GGGPGDGGGH GRGRGRGSYR
QTVCRHWLRG LCMKGEACGF LHQFDKARMP VCRFFRDFGE CREPDCAYKH SYDDVKECNM
YKMGFCPNGP NCRYKHVKLP GPPPPVEEVL QKILQIRSFN KFNQHRHNNY NQQGERPQHP
QGSGLPNQNS IDNTTTTTAQ PAVGQQAQTT NQQPPQQQQQ QQQQQQQQQK PNTNDQVQSV
PNGSSNQATR IATPLPQGPS RYFIVKSCNR ENLEISVQQG IWATQRSNEA KLNEAFESIE
NVILIFSINR TRNFQGCAKM TSRIGGYIGG GNWKSAHGTA HYGRNFSIQW LKLCELSFQK
THHLRNPYND NLPVKISRDC QELEPFIGEQ LASLLYLEPD SELTAILIAA EAKKEEEKAK
GVSADEAADN QDIVLFDDNE EEEEEESEEE EEGNGQESQG RGRGRGMMWP PQMPMLRGVG
PMMGGRGFPP NMIGDGFGFG GGFGMPDPFG VPRGFPPFGP RFPGDFARGG PMPGMVFPGR
PPQPGGMFPM GLEMMMGPGR GPLMGGLGMG GPGRPNRPVG MAPFMPPPPP PNNRGTKREQ
RRPGGERGDR YETTSDQGSR GHDATGNSGA EGARSQSGDR YGRSALRDDD SESDEEAAPR
RSRKR
