C3H47_ARATH
ID C3H47_ARATH Reviewed; 580 AA.
AC Q93ZS9; Q570I5; Q9LY47;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 25-MAY-2022, entry version 138.
DE RecName: Full=Zinc finger CCCH domain-containing protein 47;
DE Short=AtC3H47;
DE AltName: Full=AtSZF1;
GN OrderedLocusNames=At3g55980; ORFNames=F27K19.160;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=17609218; DOI=10.1093/pcp/pcm088;
RA Sun J., Jiang H., Xu Y., Li H., Wu X., Xie Q., Li C.;
RT "The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress
RT responses in Arabidopsis.";
RL Plant Cell Physiol. 48:1148-1158(2007).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- FUNCTION: Involved in salt stress response. May positively modulate
CC plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:17609218}.
CC -!- TISSUE SPECIFICITY: Expressed in roots and anthers.
CC {ECO:0000269|PubMed:17609218}.
CC -!- INDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD93854.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC Sequence=CAB87852.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL163832; CAB87852.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE79463.1; -; Genomic_DNA.
DR EMBL; AY056282; AAL07131.1; -; mRNA.
DR EMBL; BT008625; AAP40446.1; -; mRNA.
DR EMBL; AK220723; BAD93854.1; ALT_INIT; mRNA.
DR EMBL; AK226861; BAE98950.1; -; mRNA.
DR PIR; T49210; T49210.
DR RefSeq; NP_567030.1; NM_115456.3.
DR AlphaFoldDB; Q93ZS9; -.
DR SMR; Q93ZS9; -.
DR BioGRID; 10080; 11.
DR IntAct; Q93ZS9; 9.
DR STRING; 3702.AT3G55980.1; -.
DR iPTMnet; Q93ZS9; -.
DR PaxDb; Q93ZS9; -.
DR PRIDE; Q93ZS9; -.
DR ProteomicsDB; 239204; -.
DR EnsemblPlants; AT3G55980.1; AT3G55980.1; AT3G55980.
DR GeneID; 824764; -.
DR Gramene; AT3G55980.1; AT3G55980.1; AT3G55980.
DR KEGG; ath:AT3G55980; -.
DR Araport; AT3G55980; -.
DR TAIR; locus:2082068; AT3G55980.
DR eggNOG; KOG1595; Eukaryota.
DR HOGENOM; CLU_015068_2_0_1; -.
DR InParanoid; Q93ZS9; -.
DR PhylomeDB; Q93ZS9; -.
DR PRO; PR:Q93ZS9; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q93ZS9; baseline and differential.
DR Genevisible; Q93ZS9; AT.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0071456; P:cellular response to hypoxia; HEP:TAIR.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; TAS:TAIR.
DR Gene3D; 1.25.40.20; -; 1.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR045234; Unkempt-like.
DR InterPro; IPR041367; Znf-CCCH_4.
DR InterPro; IPR000571; Znf_CCCH.
DR PANTHER; PTHR14493; PTHR14493; 1.
DR Pfam; PF13637; Ank_4; 1.
DR Pfam; PF18044; zf-CCCH_4; 1.
DR SMART; SM00248; ANK; 2.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF48403; SSF48403; 1.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
DR PROSITE; PS50088; ANK_REPEAT; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 2: Evidence at transcript level;
KW ANK repeat; DNA-binding; Metal-binding; Nucleus; Reference proteome;
KW Repeat; Stress response; Zinc; Zinc-finger.
FT CHAIN 1..580
FT /note="Zinc finger CCCH domain-containing protein 47"
FT /id="PRO_0000372001"
FT REPEAT 72..102
FT /note="ANK 1"
FT REPEAT 107..139
FT /note="ANK 2"
FT ZN_FING 251..278
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 286..310
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 421..451
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 580 AA; 64058 MW; A6238A3165DA626F CRC64;
MCSGPKSNLC SSRTLTEIES RQKEEETMLL LEFAACDDLD SFKREVEEKG LDLDESGLWY
CRRVGSKKMG LEERTPLMVA AMYGSIKVLT FIVSTGKSDV NRACGEERVT PLHCAVAGCS
VNMIEVINVL LDASALVNSV DANGNQPLDV FVRVSRFVAS PRRKAVELLL RGGGVGGLID
EAVEEEIKIV SKYPADASLP DINEGVYGSD EFRMYSFKVK PCSRAYSHDW TECAFVHPGE
NARRRDPRKY PYTCVPCPEF RKGSCPKGDS CEYAHGVFES WLHPAQYKTR LCKDETGCAR
KVCFFAHKRE EMRPVNASTG SAVAQSPFSS LEMMPGLSPL AYSSGVSTPP VSPMANGVPS
SPRNGGSWQN RVNTLTPPAL QLNGGSRLKS TLSARDIDME MEMELRLRGF GNNVEETFGS
YVSSPSRNSQ MGQNMNQHYP SSPVRQPPSQ HGFESSAAAA VAVMKARSTA FAKRSLSFKP
ATQAAPQSNL SDWGSPNGKL EWGMKGEELN KMRRSVSFGI HGNNNNNAAR DYRDEPDVSW
VNSLVKDSTV VSERSFGMNE RVRIMSWAEQ MYREKEQTVV
