ID   C3H50_ORYSJ             Reviewed;         657 AA.
AC   Q84SL2; B7EDZ8; Q70KS5;
DT   02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-JUN-2003, sequence version 1.
DT   03-AUG-2022, entry version 115.
DE   RecName: Full=Zinc finger CCCH domain-containing protein 50;
DE            Short=OsC3H50;
DE   AltName: Full=Protein ZF;
GN   OrderedLocusNames=Os07g0568300, LOC_Os07g38090;
GN   ORFNames=OJ1092_A07.129, OsJ_023829;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA   Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA   Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA   Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA   Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA   Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA   Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA   Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA   Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA   Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA   Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA   Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA   McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
RN   [5]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
RN   [6]
RP   NUCLEOTIDE SEQUENCE [MRNA] OF 370-635.
RC   TISSUE=Embryo;
RX   PubMed=15078336; DOI=10.1111/j.1365-313x.2004.02037.x;
RA   Ye R., Yao Q.-H., Xu Z.-H., Xue H.-W.;
RT   "Development of an efficient method for the isolation of factors involved
RT   in gene transcription during rice embryo development.";
RL   Plant J. 38:348-357(2004).
RN   [7]
RP   NOMENCLATURE.
RX   PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA   Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT   "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL   BMC Genomics 9:44-44(2008).
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DR   EMBL; AP003866; BAC55671.1; -; Genomic_DNA.
DR   EMBL; AP008213; BAF21942.1; -; Genomic_DNA.
DR   EMBL; AP014963; BAT02206.1; -; Genomic_DNA.
DR   EMBL; CM000144; EAZ40346.1; -; Genomic_DNA.
DR   EMBL; AK067784; BAG90595.1; -; mRNA.
DR   EMBL; AK067895; BAG90654.1; -; mRNA.
DR   EMBL; AJ575241; CAE00877.1; -; mRNA.
DR   RefSeq; XP_015647507.1; XM_015792021.1.
DR   RefSeq; XP_015647508.1; XM_015792022.1.
DR   AlphaFoldDB; Q84SL2; -.
DR   SMR; Q84SL2; -.
DR   STRING; 4530.OS07T0568300-01; -.
DR   PaxDb; Q84SL2; -.
DR   PRIDE; Q84SL2; -.
DR   EnsemblPlants; Os07t0568300-01; Os07t0568300-01; Os07g0568300.
DR   EnsemblPlants; Os07t0568300-02; Os07t0568300-02; Os07g0568300.
DR   GeneID; 4343641; -.
DR   Gramene; Os07t0568300-01; Os07t0568300-01; Os07g0568300.
DR   Gramene; Os07t0568300-02; Os07t0568300-02; Os07g0568300.
DR   KEGG; osa:4343641; -.
DR   eggNOG; KOG1595; Eukaryota.
DR   HOGENOM; CLU_015068_1_0_1; -.
DR   InParanoid; Q84SL2; -.
DR   OMA; CLNIATV; -.
DR   OrthoDB; 372844at2759; -.
DR   Proteomes; UP000000763; Chromosome 7.
DR   Proteomes; UP000007752; Chromosome 7.
DR   Proteomes; UP000059680; Chromosome 7.
DR   Genevisible; Q84SL2; OS.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0060255; P:regulation of macromolecule metabolic process; IEA:UniProt.
DR   GO; GO:0051171; P:regulation of nitrogen compound metabolic process; IEA:UniProt.
DR   GO; GO:0080090; P:regulation of primary metabolic process; IEA:UniProt.
DR   Gene3D; 1.25.40.20; -; 1.
DR   InterPro; IPR002110; Ankyrin_rpt.
DR   InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR   InterPro; IPR045234; Unkempt-like.
DR   InterPro; IPR000571; Znf_CCCH.
DR   InterPro; IPR036855; Znf_CCCH_sf.
DR   PANTHER; PTHR14493; PTHR14493; 1.
DR   Pfam; PF12796; Ank_2; 1.
DR   Pfam; PF00642; zf-CCCH; 1.
DR   SMART; SM00248; ANK; 2.
DR   SMART; SM00356; ZnF_C3H1; 2.
DR   SUPFAM; SSF48403; SSF48403; 1.
DR   SUPFAM; SSF90229; SSF90229; 1.
DR   PROSITE; PS50297; ANK_REP_REGION; 1.
DR   PROSITE; PS50088; ANK_REPEAT; 2.
DR   PROSITE; PS50103; ZF_C3H1; 1.
PE   2: Evidence at transcript level;
KW   ANK repeat; DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc;
KW   Zinc-finger.
FT   CHAIN           1..657
FT                   /note="Zinc finger CCCH domain-containing protein 50"
FT                   /id="PRO_0000346844"
FT   REPEAT          68..97
FT                   /note="ANK 1"
FT   REPEAT          104..136
FT                   /note="ANK 2"
FT   ZN_FING         274..302
FT                   /note="C3H1-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT   ZN_FING         311..333
FT                   /note="C3H1-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT   REGION          176..222
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          507..566
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        176..208
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        551..565
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   657 AA;  69392 MW;  BDB7A7D5C7F72848 CRC64;
     MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW
     YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGGCVDVNRR PGADGATALH CAASGGSRNA
     VAVVKLLLAA GADPATPDSA GRFPADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG
     SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF
     KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG
     VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNSGAGLLSP RASSSIDMTA
     AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLE
     WESQYLGALC LPPSSRPQPR LSAGLSIRPT IAPSNLEDMY ASDMAMSPRF PNDQGHSVYS
     PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSSLAHS PFGGMSPRSP RTMEPTSPLS
     ARVGAPATQR PSVGSPRNSS AWGTVGSPMG KVDWGVDSEE LVRLRRPAQP GFGEDETDVS
     WVQSLVSNAE LNGKRGEVQG MPGTSALMNR PDLNNQGDLL DQTVIGAWLE QMHLDQK