C3H51_ARATH
ID C3H51_ARATH Reviewed; 378 AA.
AC Q9FNG6; Q8L789;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 140.
DE RecName: Full=Zinc finger CCCH domain-containing protein 51;
DE Short=AtC3H51;
GN OrderedLocusNames=At5g06420; ORFNames=MHF15.6;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9405937; DOI=10.1093/dnares/4.4.291;
RA Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. II. Sequence
RT features of the regions of 1,044,062 bp covered by thirteen physically
RT assigned P1 clones.";
RL DNA Res. 4:291-300(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AB006700; BAB08964.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91012.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91013.1; -; Genomic_DNA.
DR EMBL; AY136406; AAM97072.1; -; mRNA.
DR EMBL; BT000229; AAN15548.1; -; mRNA.
DR EMBL; AY087435; AAM67329.1; -; mRNA.
DR RefSeq; NP_196260.1; NM_120725.3.
DR RefSeq; NP_850780.1; NM_180449.1.
DR AlphaFoldDB; Q9FNG6; -.
DR SMR; Q9FNG6; -.
DR STRING; 3702.AT5G06420.2; -.
DR PaxDb; Q9FNG6; -.
DR PRIDE; Q9FNG6; -.
DR ProteomicsDB; 240259; -.
DR EnsemblPlants; AT5G06420.1; AT5G06420.1; AT5G06420.
DR EnsemblPlants; AT5G06420.2; AT5G06420.2; AT5G06420.
DR GeneID; 830530; -.
DR Gramene; AT5G06420.1; AT5G06420.1; AT5G06420.
DR Gramene; AT5G06420.2; AT5G06420.2; AT5G06420.
DR KEGG; ath:AT5G06420; -.
DR Araport; AT5G06420; -.
DR TAIR; locus:2164320; AT5G06420.
DR eggNOG; KOG1813; Eukaryota.
DR HOGENOM; CLU_050460_1_2_1; -.
DR InParanoid; Q9FNG6; -.
DR OMA; RGMNNYQ; -.
DR OrthoDB; 1420266at2759; -.
DR PhylomeDB; Q9FNG6; -.
DR PRO; PR:Q9FNG6; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FNG6; baseline and differential.
DR Genevisible; Q9FNG6; AT.
DR GO; GO:0005684; C:U2-type spliceosomal complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0034247; P:snoRNA splicing; IBA:GO_Central.
DR Gene3D; 3.30.40.10; -; 1.
DR InterPro; IPR039971; CWC24-like.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR12930; PTHR12930; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00184; RING; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Zinc; Zinc-finger.
FT CHAIN 1..378
FT /note="Zinc finger CCCH domain-containing protein 51"
FT /id="PRO_0000372004"
FT ZN_FING 235..263
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 312..350
FT /note="RING-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00175"
FT REGION 14..150
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 283..303
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 30..73
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 80..96
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 216
FT /note="G -> E (in Ref. 3; AAN15548/AAM97072)"
FT /evidence="ECO:0000305"
FT CONFLICT 317
FT /note="E -> D (in Ref. 3; AAN15548/AAM97072)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 378 AA; 42460 MW; 173D71BB88A3FE2D CRC64;
MEPFVVKENI VASASSPMKK RRIDHTESAD GSAINASNSS SIGGNDTVMN MAEFGNDNSN
NQESQQVCTF FKKPTKSKNI RKRTIDADEE DGDSKSESSI LQNLKKVAKP DSNLYFSSGP
STRTSGAPER PVFHYDSSKE IQVQNDSGAT ATLETETDFN QDARAIRERV LKKADHALKG
NKKKASDEKL YKGIHGYTDH KAGFRREQTI SSEKAGGSHG PLRASAHIRV SARFDYQPDI
CKDYKETGYC GYGDSCKFLH DRGDYKPGWQ IEKEWEEAEK VRKRNKAMGV EDDDDEADKD
SDEDENALPF ACFICREPFL DPVVTKCKHY FCEHCALKHH TKNKKCFVCN QPTMGIFNAA
HEIKKRMAEE RSKAEQGL
