C3H53_ORYSJ
ID C3H53_ORYSJ Reviewed; 682 AA.
AC Q0D3J9; B7F3U2; Q7XHV6;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Zinc finger CCCH domain-containing protein 53;
DE Short=OsC3H53;
GN OrderedLocusNames=Os07g0682400, LOC_Os07g48410; ORFNames=OSJNBa0008J01.35;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC80021.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP005099; BAC80021.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAF22574.1; -; Genomic_DNA.
DR EMBL; AP014963; BAT03255.1; -; Genomic_DNA.
DR EMBL; AK111514; BAG99289.1; -; mRNA.
DR EMBL; AK111556; BAG99304.1; -; mRNA.
DR EMBL; AK119893; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015647087.1; XM_015791601.1.
DR AlphaFoldDB; Q0D3J9; -.
DR SMR; Q0D3J9; -.
DR STRING; 4530.OS07T0682400-01; -.
DR PaxDb; Q0D3J9; -.
DR PRIDE; Q0D3J9; -.
DR EnsemblPlants; Os07t0682400-01; Os07t0682400-01; Os07g0682400.
DR EnsemblPlants; Os07t0682400-02; Os07t0682400-02; Os07g0682400.
DR EnsemblPlants; Os07t0682400-03; Os07t0682400-03; Os07g0682400.
DR GeneID; 4344312; -.
DR Gramene; Os07t0682400-01; Os07t0682400-01; Os07g0682400.
DR Gramene; Os07t0682400-02; Os07t0682400-02; Os07g0682400.
DR Gramene; Os07t0682400-03; Os07t0682400-03; Os07g0682400.
DR KEGG; osa:4344312; -.
DR eggNOG; ENOG502QWIK; Eukaryota.
DR HOGENOM; CLU_028778_0_0_1; -.
DR InParanoid; Q0D3J9; -.
DR OMA; DFSSCTT; -.
DR OrthoDB; 394732at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR Genevisible; Q0D3J9; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR CDD; cd12458; RRM_AtC3H46_like; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR034365; AtC3H46-like_RRM.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; DNA-binding; Metal-binding; Reference proteome; RNA-binding;
KW Zinc; Zinc-finger.
FT CHAIN 1..682
FT /note="Zinc finger CCCH domain-containing protein 53"
FT /id="PRO_0000346846"
FT DOMAIN 361..437
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT ZN_FING 229..256
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 91..111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 441..460
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 535..616
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 485..521
FT /evidence="ECO:0000255"
FT COMPBIAS 536..551
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 579..606
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 318
FT /note="Q -> R (in Ref. 4; AK119893)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 682 AA; 72494 MW; F248C731252CA232 CRC64;
MDAYEATKVV FSRIQALDPD HAAKIMGFLL IQDHGEKEMI RLAFGPEALL HTVMAKARKE
LGLLPASGPG TPTSVAAAAA AAHSPFMLSR QNSGRCGTAP SPLSVSSPSS WAPPPVFSRN
NSISNGAGEE MVGLGDELIS PANGGGPPSP FFGGDPLMDE LQLQDQLAFL NEGGVPAGHQ
MPMFDGGECR SPGGGDGGLF SYNLGWANGG PGHRRSASVS ELCLGGADGL GWKPCLYYAR
GYCKNGSACR FVHGGLPDDA AGKMDPSAVE QQCQDFLIRS KSQRLAAAAF PYSPTGSLPG
SPSAATKCLS LLLQQQQQQN ESQRAAAAAA LMLGGDEAHK FMGRPRLERA DFASMMNPGS
RQIYLTFPAD STFREEDVSN YFSIYGPVHD VRIPYQQKRM FGFVTFVYPE TVKLILAKGN
PHFICDARVL VKPYKEKGKV PDKYRKQHQP GERVDFSSCT TPTGLDARDP FDMHQLGARM
LQHSNSANEM LLRRKLEEQQ QAAELQQAIE LHSRRLMGLQ LLDFKSRAAA APTPIGNPFS
ASQTAANATG ESPPDSGELG KGSGFLLAHK KAVNGADKEE STGESSSPNT DSDQSVEHNL
PDSPFASPTK SAGFARDPFA PTEAEISATA STGCSATYVG INNGASNGGT NHLLPSALDM
PSPKPYFFPM SRLASDHGAI GM
