C3H55_ARATH
ID C3H55_ARATH Reviewed; 650 AA.
AC Q94CJ8; Q8GS07;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 31-MAY-2011, sequence version 3.
DT 25-MAY-2022, entry version 120.
DE RecName: Full=Zinc finger CCCH domain-containing protein 55;
DE Short=AtC3H55;
GN OrderedLocusNames=At5g12440; ORFNames=T2L20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=CAC42905.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AL592312; CAC42905.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED91809.1; -; Genomic_DNA.
DR EMBL; CP002688; AED91810.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70452.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70453.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70455.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70457.1; -; Genomic_DNA.
DR EMBL; CP002688; ANM70460.1; -; Genomic_DNA.
DR EMBL; AK119121; BAC43691.1; -; mRNA.
DR EMBL; BT002509; AAO00869.1; -; mRNA.
DR RefSeq; NP_001190296.1; NM_001203367.1.
DR RefSeq; NP_001318550.1; NM_001343240.1.
DR RefSeq; NP_001332061.1; NM_001343239.1.
DR RefSeq; NP_001332063.1; NM_001343247.1.
DR RefSeq; NP_001332065.1; NM_001343245.1.
DR RefSeq; NP_001332068.1; NM_001343242.1.
DR RefSeq; NP_568277.5; NM_121282.6.
DR AlphaFoldDB; Q94CJ8; -.
DR SMR; Q94CJ8; -.
DR STRING; 3702.AT5G12440.1; -.
DR iPTMnet; Q94CJ8; -.
DR PaxDb; Q94CJ8; -.
DR PRIDE; Q94CJ8; -.
DR ProteomicsDB; 239159; -.
DR EnsemblPlants; AT5G12440.1; AT5G12440.1; AT5G12440.
DR EnsemblPlants; AT5G12440.11; AT5G12440.11; AT5G12440.
DR EnsemblPlants; AT5G12440.12; AT5G12440.12; AT5G12440.
DR EnsemblPlants; AT5G12440.2; AT5G12440.2; AT5G12440.
DR EnsemblPlants; AT5G12440.4; AT5G12440.4; AT5G12440.
DR EnsemblPlants; AT5G12440.7; AT5G12440.7; AT5G12440.
DR EnsemblPlants; AT5G12440.9; AT5G12440.9; AT5G12440.
DR GeneID; 831119; -.
DR Gramene; AT5G12440.1; AT5G12440.1; AT5G12440.
DR Gramene; AT5G12440.11; AT5G12440.11; AT5G12440.
DR Gramene; AT5G12440.12; AT5G12440.12; AT5G12440.
DR Gramene; AT5G12440.2; AT5G12440.2; AT5G12440.
DR Gramene; AT5G12440.4; AT5G12440.4; AT5G12440.
DR Gramene; AT5G12440.7; AT5G12440.7; AT5G12440.
DR Gramene; AT5G12440.9; AT5G12440.9; AT5G12440.
DR KEGG; ath:AT5G12440; -.
DR Araport; AT5G12440; -.
DR TAIR; locus:505006612; AT5G12440.
DR eggNOG; ENOG502QSSE; Eukaryota.
DR HOGENOM; CLU_028778_0_0_1; -.
DR InParanoid; Q94CJ8; -.
DR OMA; CICLEYY; -.
DR PRO; PR:Q94CJ8; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q94CJ8; baseline and differential.
DR Genevisible; Q94CJ8; AT.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR CDD; cd12458; RRM_AtC3H46_like; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR034365; AtC3H46-like_RRM.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR000504; RRM_dom.
DR InterPro; IPR000571; Znf_CCCH.
DR Pfam; PF00076; RRM_1; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00360; RRM; 1.
DR SUPFAM; SSF54928; SSF54928; 1.
DR PROSITE; PS50102; RRM; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; RNA-binding; Zinc;
KW Zinc-finger.
FT CHAIN 1..650
FT /note="Zinc finger CCCH domain-containing protein 55"
FT /id="PRO_0000372008"
FT DOMAIN 357..433
FT /note="RRM"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00176"
FT ZN_FING 232..254
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 67..162
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 566..650
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 89..155
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 569..584
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 599..613
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 625..650
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 650 AA; 71960 MW; 93E267CB14003FC3 CRC64;
MDSGDATSLL LTKIRSLEPD YAPKIIGYLL LHDFGDRDLM HLARGPESIL QSTISKVKSL
LGIFSNNSPS STPTSPSPLN PICRPPLNGR GSSHSNGFMD FRRNSPSSPS STSPWSFNNC
INGNNGNNPH ISPKHTPISK PFSSHQSNGL SATHSGSADA AGGADLLDDQ QLNDCLSFLD
DSCSKTEDLV DPSIPLDYSV DGDGETHLHR RSFSCDASFV SGDDGFGGGC KPCVYFSRGL
CKNGESCKFI HGGYPDNMDG NGIVADSPRK MENFVRQHEE MMRLKLAYQQ QRLASQILGR
APQLPYEKRM DFLLQQHAQR DGGLPFGDER FWSSSPGRLE RMELAMHLGD QSNSASRQIY
LTFPADSTFK DEDVATYFSL FGTVQDVRIP YQQKRMFGFV SFAHPETVKV VLARGNPHFI
CDSRVLVKPY KEKGKVLDKK QQQLLQQQIE RGNYSPCSSP SGIDPREQSD FHLGSKMLYE
RREMMRRKIE QADLLRAIEL ERRRFINLQL PEFKNSVTLN HHRSFSVGSP GYFSSAGNQS
PDFQSELNGA DALKVTDDTL ELHPYPVVNP MSVNNSYSNG AKEETNKSEL LDPDSGSTIE
LVLPSNLFPS ASSTDDHKTD DSAETNAKVG VSSTNENDHE PPVTTNNLMQ
