C3H55_ORYSJ
ID C3H55_ORYSJ Reviewed; 958 AA.
AC Q6YYC0; A0A0P0XC26;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=Zinc finger CCCH domain-containing protein 55;
DE Short=OsC3H55;
GN OrderedLocusNames=Os08g0135800, LOC_Os08g04170;
GN ORFNames=OJ1613_G04.4-1, P0680F05.43-1;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AP003896; BAD03060.1; -; Genomic_DNA.
DR EMBL; AP005620; BAD16308.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF22858.1; -; Genomic_DNA.
DR EMBL; AP014964; BAT03734.1; -; Genomic_DNA.
DR EMBL; AK100455; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015650360.1; XM_015794874.1.
DR AlphaFoldDB; Q6YYC0; -.
DR SMR; Q6YYC0; -.
DR PaxDb; Q6YYC0; -.
DR PRIDE; Q6YYC0; -.
DR EnsemblPlants; Os08t0135800-01; Os08t0135800-01; Os08g0135800.
DR GeneID; 4344611; -.
DR Gramene; Os08t0135800-01; Os08t0135800-01; Os08g0135800.
DR KEGG; osa:4344611; -.
DR eggNOG; ENOG502QQ0W; Eukaryota.
DR HOGENOM; CLU_005370_0_0_1; -.
DR InParanoid; Q6YYC0; -.
DR OMA; NLPTIVH; -.
DR OrthoDB; 665539at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR ExpressionAtlas; Q6YYC0; baseline and differential.
DR Genevisible; Q6YYC0; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00356; ZnF_C3H1; 3.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 3.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..958
FT /note="Zinc finger CCCH domain-containing protein 55"
FT /id="PRO_0000346848"
FT ZN_FING 229..256
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 314..341
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 373..400
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..235
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 273..311
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 346..378
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 403..491
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 670..707
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 756..781
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 799..873
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..22
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 29..50
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 64..78
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 79..124
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 150..168
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 182..206
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 208..223
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 422..440
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 471..485
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 813..828
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 848..873
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 446
FT /note="D -> G (in Ref. 4; AK100455)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 958 AA; 105584 MW; BE401E9CEB55A091 CRC64;
MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DDHRKGSDLL PSQDFGHGND
KQIGESLNLK STVSMHHGSA GHEQDRADGL NKDIKERSSK ASSERLPLRM GDEDHNKNDW
HNRGFEKAAG NQGMSRYADD RRRGDGWGTT LSRGYSSRIS SSGPDAWKRS RSPLSPRGGW
NRSRRNRSRS RSRSRSIGRG RGRSRSRSRS PYFSDRGSEW RVERSRSSGG PALPCRDFVA
GRCRRGSNCR FPHEDGVRRQ FDEHYPVDSR EKYGHQNRDF MDPREQDDYL RNRPPRGGHY
DEGTWERSEP RREYRSTMPC HDFVKGRCSR GANCRYVHDD STPHGGWRDE VRDNAIGRSG
PDSSYGNRTE HRRTNKNPCK FFANGGCRRG QNCPYLHEEA SQSQMGLGAP DEPGYTGGPT
TRGDYLSWSE QNNSVQASSH VLSRDDRENP VPQGTGRNDS RYENKNRHSK DAGSSQYQIF
PQDDFGSVGQ NKPEIAASQL PQFIPSVQTG TESINIDKVS DMGGQSGPGT VGNLSMQIGM
HSANLLGGHN LGQKAESQDA ISQISAAPSL PGATQLQNTT SSVPLNSQVQ QSDFSLHPNR
QDQFAVPHAT TNNSAPSMQS QPVAPYMGHS QHGYIMGAQS LPDLSVHNGQ IFNVGQVPQN
LPTIVHAGQN QATSDTPNLG RDSGDQGLQN THNFQPVAPN EQTQSQTLQG LSVVASSSSV
DMAGAPLSHN AVSSQEEVRR VTASLAQYFV PSLTADTSGL QSSQPDPNSS LMNNSSAAPQ
AVQPNHWPWL QQAGMVQPSH IVPPEQPAPQ TFQAPMAAGS SNGNPLLLPH SVAPTVPAAA
LATNETTPAE NKKEEPKDTD AEANEDGENK KSKDSKALKM FKLALADFVK DALKPTWKEG
QMSREVHKTI VKKVVDKVTT TVENTPQTKE KIDIYMSYSR EKLNKLVQAY VGKYAKKD
