C3H57_ORYSJ
ID C3H57_ORYSJ Reviewed; 605 AA.
AC A3BUD2; Q6Z8U9;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 20-MAR-2007, sequence version 1.
DT 03-AUG-2022, entry version 69.
DE RecName: Full=Putative zinc finger CCCH domain-containing protein 57;
DE Short=OsC3H57;
GN OrderedLocusNames=Os08g0491700, LOC_Os08g38370;
GN ORFNames=OsJ_026654, P0605H02.48, P0686H11.8;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD09680.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAD10002.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP004620; BAD09680.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP004762; BAD10002.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014964; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; CM000145; EAZ43171.1; -; Genomic_DNA.
DR AlphaFoldDB; A3BUD2; -.
DR STRING; 4530.OS08T0491700-00; -.
DR PaxDb; A3BUD2; -.
DR PRIDE; A3BUD2; -.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_450264_0_0_1; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; A3BUD2; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IEA:InterPro.
DR InterPro; IPR045877; ZFP36-like.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR12547; PTHR12547; 1.
DR Pfam; PF00642; zf-CCCH; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF90229; SSF90229; 2.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 4: Predicted;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc; Zinc-finger.
FT CHAIN 1..605
FT /note="Putative zinc finger CCCH domain-containing protein
FT 57"
FT /id="PRO_0000346850"
FT ZN_FING 519..547
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 557..585
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 198..218
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 238..261
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 375..403
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 377..403
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 605 AA; 68736 MW; 1E02AA9B654F66A4 CRC64;
MADMKQEEDE LAVDPGVGAV CDPVTKLRFE AIVCLLDRIP ITLQQIDMFG QDVAFRTKRI
GNIEALLDFL KGSAAATWGA RAGAGEPIDA SSPELHRLVE DAETAYRDVR GLQPRMVVQM
PRVFHKVCLP KLHQLLVIAR RLLAQNVALR RLLLQPVGCD VSPMALAEAA VSSDDFERHG
RNKVVIDEFG YEDLLRRRHT GHESQNDADD AEQHGREVRE GEYEDLILMR HRDTSHELLQ
DDARRRRADA EAEQQGGDGE VRDEYEDYLC RQLGAVYSGP DQIYEHDMRG PEPAHSPNTP
DQIYVPCERM LPYPSNCDNA EDRIHMACLA LKNLVKDMEG IYSPRGTLWQ YLEDVISLAH
ALFLENTKLH RFTDQASHQD LPLQPPQGFP FQQQPQHDGY QQPGVPFQQP QQGGYYGHGQ
GIMFQRGGYL QDVPFQHWQW QQGGYGQGFM FPQAQHQGGY GQGFLSEQPL PGDPSFMNMQ
APYDGDGGVL FQKPQHYHHG HVPSEKGAIQ AKGKQKMREP KTVMCPDWCR TGHCSSGDGC
EYAHSQDELR VIDARPKYRT EPCRYWLAGK GCWYGDKCRY KQHRLAREPL YVDPFLTGHE
LRNKT
