C3H5_ORYSJ
ID C3H5_ORYSJ Reviewed; 466 AA.
AC Q5NAV3; A0A0N7KCP6; B7EMW3; Q0JNY2;
DT 26-APR-2005, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-2005, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=Zinc finger CCCH domain-containing protein 5;
DE Short=OsC3H5;
DE AltName: Full=Zinc finger CCCH domain-containing protein ZFN-like 3;
GN OrderedLocusNames=Os01g0257400, LOC_Os01g15350; ORFNames=P0462H08.6;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
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DR EMBL; AP002525; BAD81393.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04546.2; -; Genomic_DNA.
DR EMBL; AP014957; BAS71401.1; -; Genomic_DNA.
DR EMBL; AK073920; BAG93710.1; -; mRNA.
DR RefSeq; XP_015622429.1; XM_015766943.1.
DR AlphaFoldDB; Q5NAV3; -.
DR STRING; 4530.OS01T0257400-01; -.
DR PaxDb; Q5NAV3; -.
DR PRIDE; Q5NAV3; -.
DR EnsemblPlants; Os01t0257400-01; Os01t0257400-01; Os01g0257400.
DR GeneID; 4326230; -.
DR Gramene; Os01t0257400-01; Os01t0257400-01; Os01g0257400.
DR KEGG; osa:4326230; -.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_033292_1_1_1; -.
DR InParanoid; Q5NAV3; -.
DR OMA; LEWTSHG; -.
DR OrthoDB; 625016at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q5NAV3; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00642; zf-CCCH; 5.
DR SMART; SM00356; ZnF_C3H1; 5.
DR SUPFAM; SSF90229; SSF90229; 5.
DR PROSITE; PS50103; ZF_C3H1; 5.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Nucleus; Reference proteome; Repeat; Zinc;
KW Zinc-finger.
FT CHAIN 1..466
FT /note="Zinc finger CCCH domain-containing protein 5"
FT /id="PRO_0000213924"
FT ZN_FING 51..79
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 101..129
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 145..173
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 299..327
FT /note="C3H1-type 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 345..373
FT /note="C3H1-type 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..26
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 466 AA; 49089 MW; A799CB01CB5B68A8 CRC64;
MEPYAAAEGG GGGGGGGSTD TGLEESMWRM GLGGGGGGGG EAVAAGRLPE RPGEADCVYY
LRTGACGYGE NCRYNHPRDR AAAAVLNGGG KTTHSAEYPE RPGQPVCEYY MKNGTCKFGS
NCKYDHPREG SVQAVMLNSS GYPLRSGEKD CTYYVKTGHC KFGSTCKFHH PEIGGVSETP
NMYPPVQPQP ISSSHPYQHL AGWQMGRPPV LPGSFLSGSY PPMMLPSTVV PMQGWNPYIS
PVNQVASAGG HQTVQAGPFY GLSHQGPSAA VTYGSQYAPL SSSTMPSSSS KQEPAFPARP
GQPECQYYLK TGSCKFGSAC KYHHPQYLNT PKSNCMLSPL GLPLRPGSQP CAYYTQHGFC
KFGPTCKFDH PMGTLSYSPS ASSITDLPIA PYPLNYAVAP VAPPSSSSDL RPEYLLTKEF
SANQSASPGT TCGPAGAMLK AYAPHMLIRP QTSGAGGMVT THGGEL
