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C3H61_ARATH
ID   C3H61_ARATH             Reviewed;         381 AA.
AC   Q9FKW2;
DT   05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT   01-MAR-2001, sequence version 1.
DT   25-MAY-2022, entry version 119.
DE   RecName: Full=Zinc finger CCCH domain-containing protein 61;
DE            Short=AtC3H61;
DE   AltName: Full=Tandem CCCH Zinc Finger protein 5 {ECO:0000303|PubMed:26978070};
DE            Short=AtTZF5 {ECO:0000303|PubMed:26978070};
GN   Name=TZF5 {ECO:0000303|PubMed:26978070};
GN   OrderedLocusNames=At5g44260 {ECO:0000312|Araport:AT5G44260};
GN   ORFNames=K9L2.1 {ECO:0000312|EMBL:BAB10111.1};
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9679202; DOI=10.1093/dnares/5.2.131;
RA   Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence
RT   features of the regions of 1,381,565 bp covered by twenty one physically
RT   assigned P1 and TAC clones.";
RL   DNA Res. 5:131-145(1998).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
RN   [4]
RP   NOMENCLATURE.
RX   PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA   Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT   "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL   BMC Genomics 9:44-44(2008).
RN   [5]
RP   INTERACTION WITH MARD1 AND RD21A, AND SUBCELLULAR LOCATION.
RX   PubMed=26978070; DOI=10.1371/journal.pone.0151574;
RA   Bogamuwa S., Jang J.C.;
RT   "Plant tandem CCCH zinc finger proteins interact with ABA, drought, and
RT   stress response regulators in processing-bodies and stress granules.";
RL   PLoS ONE 11:E0151574-E0151574(2016).
CC   -!- SUBUNIT: Interacts with MARD1/FLZ9 and RD21A via its CCCH zing finger
CC       domains. {ECO:0000269|PubMed:26978070}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm, Stress granule
CC       {ECO:0000269|PubMed:26978070}. Cytoplasm, P-body
CC       {ECO:0000269|PubMed:26978070}.
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DR   EMBL; AB011475; BAB10111.1; -; Genomic_DNA.
DR   EMBL; CP002688; AED95082.1; -; Genomic_DNA.
DR   EMBL; AY034916; AAK59423.1; -; mRNA.
DR   EMBL; AY142542; AAN13124.1; -; mRNA.
DR   RefSeq; NP_199239.1; NM_123793.3.
DR   AlphaFoldDB; Q9FKW2; -.
DR   BioGRID; 19699; 10.
DR   IntAct; Q9FKW2; 10.
DR   STRING; 3702.AT5G44260.1; -.
DR   iPTMnet; Q9FKW2; -.
DR   PaxDb; Q9FKW2; -.
DR   PRIDE; Q9FKW2; -.
DR   ProteomicsDB; 240489; -.
DR   EnsemblPlants; AT5G44260.1; AT5G44260.1; AT5G44260.
DR   GeneID; 834449; -.
DR   Gramene; AT5G44260.1; AT5G44260.1; AT5G44260.
DR   KEGG; ath:AT5G44260; -.
DR   Araport; AT5G44260; -.
DR   TAIR; locus:2158685; AT5G44260.
DR   eggNOG; KOG1595; Eukaryota.
DR   HOGENOM; CLU_044407_3_0_1; -.
DR   InParanoid; Q9FKW2; -.
DR   OMA; EVCPEFS; -.
DR   OrthoDB; 937629at2759; -.
DR   PhylomeDB; Q9FKW2; -.
DR   PRO; PR:Q9FKW2; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   ExpressionAtlas; Q9FKW2; baseline and differential.
DR   Genevisible; Q9FKW2; AT.
DR   GO; GO:0010494; C:cytoplasmic stress granule; IDA:TAIR.
DR   GO; GO:0000932; C:P-body; IDA:TAIR.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:TAIR.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   InterPro; IPR045234; Unkempt-like.
DR   InterPro; IPR000571; Znf_CCCH.
DR   InterPro; IPR036855; Znf_CCCH_sf.
DR   PANTHER; PTHR14493; PTHR14493; 1.
DR   Pfam; PF00642; zf-CCCH; 1.
DR   SMART; SM00356; ZnF_C3H1; 2.
DR   SUPFAM; SSF90229; SSF90229; 1.
DR   PROSITE; PS50103; ZF_C3H1; 1.
PE   1: Evidence at protein level;
KW   Cytoplasm; DNA-binding; Metal-binding; Reference proteome; Repeat; Zinc;
KW   Zinc-finger.
FT   CHAIN           1..381
FT                   /note="Zinc finger CCCH domain-containing protein 61"
FT                   /id="PRO_0000372011"
FT   ZN_FING         101..128
FT                   /note="C3H1-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT   ZN_FING         137..159
FT                   /note="C3H1-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT   REGION          1..39
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   381 AA;  42058 MW;  3B30AEC755CD3FAF CRC64;
     MDVEHHKSGH ISRPTVDIPP RKLLSSAKSP SSVSSPLRDY KEQKDYCYDS DSEDPYAGDH
     FRMYEFKIRR CTRSRSHDWT DCPFSHPGEK ARRRDPRRFH YTGEVCPEFS RHGDCSRGDE
     CGFAHGVFEC WLHPSRYRTE ACKDGKHCKR KVCFFAHSPR QLRVLPPSPE NHISGGCGGS
     PSSSPASVLS NKNNRCCLFC SHSPTSTLLN LSRSPSSSPP LSPADKADAF SRLSRRRTAV
     LNELISSLDS LSLTEALAAS SSSPVTMPIS TATMIASSNL SSNHHHHRLP PWLDVGDRDL
     QLQQSSPLRF ALSPSSTPSY LHGQLQPPPS SFFGDEFTPR GGRLSDFSVA AAAAAQARDK
     NSFEVGSSGD LDLGWVNDLL T
 
 
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