C3H62_ARATH
ID C3H62_ARATH Reviewed; 419 AA.
AC Q9FE91;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 140.
DE RecName: Full=Zinc finger CCCH domain-containing protein 62;
DE Short=AtC3H62;
DE AltName: Full=Zinc finger CCCH domain and WD40 repeat-containing protein 4;
GN Name=ZFWD4; OrderedLocusNames=At5g49200; ORFNames=K21P3.7;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11137290; DOI=10.1016/s0378-1119(00)00446-7;
RA Terol J., Bargues M., Perez-Alonso M.;
RT "ZFWD: a novel subfamily of plant proteins containing a C3H zinc finger and
RT seven WD40 repeats.";
RL Gene 260:45-53(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10048488; DOI=10.1093/dnares/5.6.379;
RA Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
RT features of the regions of 1,081,958 bp covered by seventeen physically
RT assigned P1 and TAC clones.";
RL DNA Res. 5:379-391(1998).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
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DR EMBL; AJ252066; CAC19850.1; -; mRNA.
DR EMBL; AB016872; BAB10338.1; -; Genomic_DNA.
DR EMBL; CP002688; AED95781.1; -; Genomic_DNA.
DR RefSeq; NP_199731.1; NM_124297.2.
DR AlphaFoldDB; Q9FE91; -.
DR SMR; Q9FE91; -.
DR STRING; 3702.AT5G49200.1; -.
DR PaxDb; Q9FE91; -.
DR PRIDE; Q9FE91; -.
DR EnsemblPlants; AT5G49200.1; AT5G49200.1; AT5G49200.
DR GeneID; 834979; -.
DR Gramene; AT5G49200.1; AT5G49200.1; AT5G49200.
DR KEGG; ath:AT5G49200; -.
DR Araport; AT5G49200; -.
DR TAIR; locus:2155904; AT5G49200.
DR eggNOG; KOG0274; Eukaryota.
DR HOGENOM; CLU_037680_1_0_1; -.
DR InParanoid; Q9FE91; -.
DR OMA; CAYWIAG; -.
DR OrthoDB; 617388at2759; -.
DR PhylomeDB; Q9FE91; -.
DR PRO; PR:Q9FE91; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FE91; baseline and differential.
DR Genevisible; Q9FE91; AT.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 2.130.10.10; -; 1.
DR InterPro; IPR020472; G-protein_beta_WD-40_rep.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR001680; WD40_repeat.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR044715; WDR86-like.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR44489; PTHR44489; 1.
DR Pfam; PF00400; WD40; 2.
DR Pfam; PF00642; zf-CCCH; 1.
DR PRINTS; PR00320; GPROTEINBRPT.
DR SMART; SM00320; WD40; 6.
DR SMART; SM00356; ZnF_C3H1; 1.
DR SUPFAM; SSF50978; SSF50978; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 2.
DR PROSITE; PS50082; WD_REPEATS_2; 2.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
DR PROSITE; PS50103; ZF_C3H1; 1.
PE 2: Evidence at transcript level;
KW DNA-binding; Metal-binding; Reference proteome; Repeat; WD repeat; Zinc;
KW Zinc-finger.
FT CHAIN 1..419
FT /note="Zinc finger CCCH domain-containing protein 62"
FT /id="PRO_0000372012"
FT REPEAT 129..168
FT /note="WD 1"
FT REPEAT 210..247
FT /note="WD 2"
FT REPEAT 256..293
FT /note="WD 3"
FT REPEAT 296..335
FT /note="WD 4"
FT REPEAT 383..419
FT /note="WD 5"
FT ZN_FING 89..116
FT /note="C3H1-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
SQ SEQUENCE 419 AA; 46070 MW; 6BE284FECE3A546F CRC64;
MDYKAPRRYY SHGVVARQQD FATDIVTRRR PYVPYDRPNK FSRSLVWTSK EYKSPEGNNM
PRTNDVSPKP PVLGLARKNA ACGPMRSSSL RKWVCKYWKD GKCKRGEQCQ FLHSWSCFPG
LAMVASLEGH NKELKGIALP EGSDKLFSVS IDGTLRVWDC NSGQCVHSIN LDAEAGSLIS
EGPWVFLGLP NAIKAFNVQT SQDLHLQAAG VVGQVNAMTI ANGMLFAGTS SGSILVWKAT
TDSESDPFKY LTSLEGHSGE VTCFAVGGQM LYSGSVDKTI KMWDLNTLQC IMTLKQHTGT
VTSLLCWDKC LISSSLDGTI KVWAYSENGI LKVVQTRRQE QSSVHALSGM HDAEAKPIIF
CSYQNGTVGI FDLPSFQERG RMFSTHTIAT LTIGPQGLLF SGDESGNLRV WTLAAGNKV
