C3H64_ARATH
ID C3H64_ARATH Reviewed; 596 AA.
AC Q84WU9; Q9LTT0;
DT 05-MAY-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=Zinc finger CCCH domain-containing protein 64;
DE Short=AtC3H64;
GN OrderedLocusNames=At5g56900; ORFNames=MHM17.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10718197; DOI=10.1093/dnares/7.1.31;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
RA Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
RT features of the regions of 3,076,755 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:31-63(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences.;
CC Name=1;
CC IsoId=Q84WU9-1; Sequence=Displayed;
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA97020.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB024035; BAA97020.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002688; AED96821.1; -; Genomic_DNA.
DR EMBL; BT002740; AAO22569.1; -; mRNA.
DR RefSeq; NP_974945.2; NM_203216.3. [Q84WU9-1]
DR AlphaFoldDB; Q84WU9; -.
DR SMR; Q84WU9; -.
DR BioGRID; 21036; 1.
DR IntAct; Q84WU9; 1.
DR STRING; 3702.AT5G56900.2; -.
DR PaxDb; Q84WU9; -.
DR PRIDE; Q84WU9; -.
DR ProteomicsDB; 240491; -. [Q84WU9-1]
DR EnsemblPlants; AT5G56900.2; AT5G56900.2; AT5G56900. [Q84WU9-1]
DR GeneID; 835792; -.
DR Gramene; AT5G56900.2; AT5G56900.2; AT5G56900. [Q84WU9-1]
DR KEGG; ath:AT5G56900; -.
DR Araport; AT5G56900; -.
DR TAIR; locus:2164630; AT5G56900.
DR eggNOG; KOG2476; Eukaryota.
DR HOGENOM; CLU_019955_2_0_1; -.
DR InParanoid; Q84WU9; -.
DR OMA; VCPNLYF; -.
DR OrthoDB; 414028at2759; -.
DR PhylomeDB; Q84WU9; -.
DR PRO; PR:Q84WU9; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q84WU9; baseline and differential.
DR Genevisible; Q84WU9; AT.
DR GO; GO:0071014; C:post-mRNA release spliceosomal complex; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0061632; F:RNA lariat debranching enzyme activator activity; IBA:GO_Central.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IBA:GO_Central.
DR Gene3D; 3.30.428.10; -; 1.
DR InterPro; IPR040194; Cwf19-like.
DR InterPro; IPR006768; Cwf19-like_C_dom-1.
DR InterPro; IPR006767; Cwf19-like_C_dom-2.
DR InterPro; IPR036265; HIT-like_sf.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR12072; PTHR12072; 1.
DR Pfam; PF04677; CwfJ_C_1; 1.
DR Pfam; PF04676; CwfJ_C_2; 1.
DR SMART; SM00356; ZnF_C3H1; 2.
DR SUPFAM; SSF54197; SSF54197; 1.
DR SUPFAM; SSF90229; SSF90229; 1.
DR PROSITE; PS50103; ZF_C3H1; 2.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Reference proteome;
KW Repeat; Zinc; Zinc-finger.
FT CHAIN 1..596
FT /note="Zinc finger CCCH domain-containing protein 64"
FT /id="PRO_0000372014"
FT ZN_FING 303..331
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 335..363
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 243..263
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 272..291
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 243..257
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 276..291
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 596 AA; 66421 MW; 4C0FC9A0636E5B22 CRC64;
MAPRILLCGD PLGRLNQLFK RVQSVSKSAG PFDALICVGQ FFPDSPEILD EFLDYVEGRA
QVPIPTYFTG DYGVVAPKIL STTSKKAENQ GFKMDGLEVC HNLFWLRGSG KFSLHGLSVA
YLSGRQSSES QFGKYSQDDV DALRALAEEP GGVDLFLTNE WPAGVTNRAA VSDIPVGISD
SSCSDSTVSE LVMEVKPRYH IAGSMGVFYA REPYLNAEST HVTRFIGLAQ VGNKNKQKFL
HALSPTPTST MSPAELSAKP PKTTLWPYNL QDGAAESKKR PNDSDSDSQY WRYDVPKRQK
SGSQGEKLCF KFVCSGSCPR GEDCHFQHNA EAREQCRRGV CLDLIIKGKC EKGPECSYKH
EFQDESSIQR KPRSENANRS KECWFCLSSP SVESHLIVSV GESFYCALPK GSLVEDHILI
IPIEHLPNTL VLSPEVESEL SRYQNGLRNC YKSQGNDAVF FELVSKRVSH ANLQVVPVPS
SRARLLPNIF SLAAEKLGFK LVTKKFNDST DGRKYLQKEY NAALGLFYVE LPDGTVLSHT
LEENEVFPAQ FGREVLAGLL KIPDRADWRN CKISQEEEAK LAEDFKKQFQ EFDPCQ
