C3H65_ORYSJ
ID C3H65_ORYSJ Reviewed; 529 AA.
AC Q2QTY2; A0A0P0Y948; Q2QTY3; Q2QTY4;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Zinc finger CCCH domain-containing protein 65;
DE Short=OsC3H65;
GN OrderedLocusNames=Os12g0278800, LOC_Os12g18120;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=3;
CC Name=1;
CC IsoId=Q2QTY2-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q2QTY2-2; Sequence=VSP_035024;
CC Name=3;
CC IsoId=Q2QTY2-3; Sequence=VSP_035024, VSP_035025;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing acceptor splice
CC site. {ECO:0000305}.
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DR EMBL; DP000011; ABA97109.1; -; Genomic_DNA.
DR EMBL; DP000011; ABA97110.1; -; Genomic_DNA.
DR EMBL; DP000011; ABA97111.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF29588.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT16696.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT16697.1; -; Genomic_DNA.
DR EMBL; AK111498; -; NOT_ANNOTATED_CDS; mRNA.
DR EMBL; AK121774; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015620302.1; XM_015764816.1. [Q2QTY2-1]
DR RefSeq; XP_015620303.1; XM_015764817.1. [Q2QTY2-2]
DR RefSeq; XP_015620308.1; XM_015764822.1. [Q2QTY2-3]
DR AlphaFoldDB; Q2QTY2; -.
DR STRING; 4530.OS12T0278800-01; -.
DR iPTMnet; Q2QTY2; -.
DR PaxDb; Q2QTY2; -.
DR PRIDE; Q2QTY2; -.
DR EnsemblPlants; Os12t0278800-01; Os12t0278800-01; Os12g0278800. [Q2QTY2-1]
DR EnsemblPlants; Os12t0278800-02; Os12t0278800-02; Os12g0278800. [Q2QTY2-2]
DR EnsemblPlants; Os12t0278800-03; Os12t0278800-03; Os12g0278800. [Q2QTY2-1]
DR GeneID; 4351978; -.
DR Gramene; Os12t0278800-01; Os12t0278800-01; Os12g0278800. [Q2QTY2-1]
DR Gramene; Os12t0278800-02; Os12t0278800-02; Os12g0278800. [Q2QTY2-2]
DR Gramene; Os12t0278800-03; Os12t0278800-03; Os12g0278800. [Q2QTY2-1]
DR KEGG; osa:4351978; -.
DR eggNOG; KOG1677; Eukaryota.
DR HOGENOM; CLU_033292_3_0_1; -.
DR InParanoid; Q2QTY2; -.
DR OMA; NASIWPD; -.
DR OrthoDB; 809368at2759; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR ExpressionAtlas; Q2QTY2; baseline and differential.
DR Genevisible; Q2QTY2; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR Pfam; PF00642; zf-CCCH; 4.
DR SMART; SM00356; ZnF_C3H1; 5.
DR SUPFAM; SSF90229; SSF90229; 2.
DR PROSITE; PS50103; ZF_C3H1; 5.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Reference proteome;
KW Repeat; Zinc; Zinc-finger.
FT CHAIN 1..529
FT /note="Zinc finger CCCH domain-containing protein 65"
FT /id="PRO_0000346856"
FT ZN_FING 108..136
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 237..265
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 285..313
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 433..461
FT /note="C3H1-type 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 477..505
FT /note="C3H1-type 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 134..179
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 313..347
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 144..165
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 329..347
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 169
FT /note="Missing (in isoform 2 and isoform 3)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_035024"
FT VAR_SEQ 190..209
FT /note="Missing (in isoform 3)"
FT /evidence="ECO:0000305"
FT /id="VSP_035025"
FT CONFLICT 135
FT /note="Missing (in Ref. 5; AK121774)"
FT /evidence="ECO:0000305"
FT CONFLICT 167
FT /note="E -> V (in Ref. 5; AK121774)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 529 AA; 57306 MW; 02BDECFA4BBB746A CRC64;
MADADARAPP KSDPGATPIG SISPSSAAPA AGEDEVEVEV EVEEQLAGLA IADQGEELLL
PKPTGWEDGP VVVAGDEVSG GEKLPGEVAA AVGVEGAAAD SRPRFPRRPG EPDCTYYVKF
GSCRFGMKCK FNHPARKKKS RVKGSNGGSG SGGSNSSSNK ASSPDDEQQA PKEEYGSYVP
DISPEVDSLG FADKGSASNL ENFKKYSYEI IDVKKGRVEP KELKVAKEKR KEFISEGSSQ
EECKYYSTPG GCKFGKACKY LHRDGKEGKT DAEKVDLNFL GLPLRPGEKE CPYYMRTGSC
KYATNCKFHH PDPSNVASKD PQLEHENGDA PQQDVQGSSS QPNASIWPDQ RTVNEHHVPF
IAPSPSYSAG MLPPQGMYPP PEWNGYHQVP LNPYYPPGVP FQHFPAAPIN HPMYKAPEIP
GHQQVPSEEY PERPGQPECQ HFVKSGFCKF RMKCKYHHPR SPVPPAGALS PLGLPIKPDQ
PVCTYYGRYG VCKFGPACAY NHPFNFSPVP AAGPPLLPAQ YPTPGNYTL
