TSR1_CAEBR
ID TSR1_CAEBR Reviewed; 788 AA.
AC Q61WR2; A8WX60;
DT 13-NOV-2007, integrated into UniProtKB/Swiss-Prot.
DT 23-NOV-2004, sequence version 1.
DT 03-AUG-2022, entry version 74.
DE RecName: Full=Pre-rRNA-processing protein TSR1 homolog;
GN Name=tag-151; ORFNames=CBG04291;
OS Caenorhabditis briggsae.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=6238;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AF16;
RX PubMed=14624247; DOI=10.1371/journal.pbio.0000045;
RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N.,
RA Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P.,
RA Fitch D.H.A., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W.,
RA Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A.,
RA Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E.,
RA Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA Durbin R.M., Waterston R.H.;
RT "The genome sequence of Caenorhabditis briggsae: a platform for comparative
RT genomics.";
RL PLoS Biol. 1:166-192(2003).
CC -!- FUNCTION: Required during maturation of the 40S ribosomal subunit in
CC the nucleolus. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the TRAFAC class translation factor GTPase
CC superfamily. Bms1-like GTPase family. TSR1 subfamily. {ECO:0000305}.
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DR EMBL; HE600920; CAP25030.3; -; Genomic_DNA.
DR RefSeq; XP_002630359.1; XM_002630313.1.
DR AlphaFoldDB; Q61WR2; -.
DR SMR; Q61WR2; -.
DR STRING; 6238.CBG04291; -.
DR EnsemblMetazoa; CBG04291.1; CBG04291.1; WBGene00026999.
DR GeneID; 8571874; -.
DR KEGG; cbr:CBG_04291; -.
DR CTD; 8571874; -.
DR WormBase; CBG04291; CBP01116; WBGene00026999; Cbr-tag-151.
DR eggNOG; KOG1980; Eukaryota.
DR HOGENOM; CLU_009858_1_0_1; -.
DR InParanoid; Q61WR2; -.
DR OMA; KTPHQQV; -.
DR OrthoDB; 186926at2759; -.
DR Proteomes; UP000008549; Chromosome II.
DR GO; GO:0005730; C:nucleolus; ISS:UniProtKB.
DR GO; GO:0030688; C:preribosome, small subunit precursor; IBA:GO_Central.
DR GO; GO:0005525; F:GTP binding; IBA:GO_Central.
DR GO; GO:0003924; F:GTPase activity; IBA:GO_Central.
DR GO; GO:0034511; F:U3 snoRNA binding; IBA:GO_Central.
DR GO; GO:0000479; P:endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IBA:GO_Central.
DR GO; GO:0000462; P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IBA:GO_Central.
DR InterPro; IPR012948; AARP2CN.
DR InterPro; IPR039761; Bms1/Tsr1.
DR InterPro; IPR007034; BMS1_TSR1_C.
DR InterPro; IPR030387; G_Bms1/Tsr1_dom.
DR PANTHER; PTHR12858; PTHR12858; 1.
DR Pfam; PF08142; AARP2CN; 1.
DR Pfam; PF04950; RIBIOP_C; 1.
DR SMART; SM00785; AARP2CN; 1.
DR SMART; SM01362; DUF663; 1.
DR PROSITE; PS51714; G_BMS1; 1.
PE 3: Inferred from homology;
KW Nucleus; Reference proteome; Ribosome biogenesis.
FT CHAIN 1..788
FT /note="Pre-rRNA-processing protein TSR1 homolog"
FT /id="PRO_0000311278"
FT DOMAIN 83..243
FT /note="Bms1-type G"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01051"
FT REGION 1..40
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 354..433
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 24..40
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 377..414
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 788 AA; 89693 MW; 6E1E1A217431FF22 CRC64;
MSTTGHRAGV FKKPAKPHKS WKGKRTKGEI TTENRGREGV KQLTRSAHST HRAVSKDARR
NQLKMARDRK MADAMERRRT SNAPCLVTIL SLGVGARPSE FLKKLATCDE TIVQTHSPST
IDFAIPRFKS RISFLTPDKE NVDSVLDAIR ASDVLCFLWP LSAELSEWDE QLLTICKAAG
LPTIVSVVPG LGGIQNHKKK EDVRKGIEFT ISKWSMSNAG VMPADSVTDN LQLLRTLNET
KKKPLTLQAR HSYMLVENLE ATESPEDSSK ITLKAQGYLR GPEWNANNLI HLPGFGDFQI
SKIETAADPH PLKTSPPKGA EVIAKADEKR QSLETEITLD AMDGEQTWPT QEELEEADKE
MRRVPKGTSS YQAAWILDDS EDDEDEEDED EDMDDEEEDK DLEEDDEEED TPMDLKSEAG
ETTASEMMFH DEIDEDINLA EVEKYRKERE NAQWPDEVDT PIDQPARIRF QKYRGLKSFR
TSTWDAKENL PVDYARIFQF ANYKNTKKNV MSKIGGNDVD AGDAVIDKKF NGVFASVYIE
NVPVSVMEAY KETKNLVLFQ LLPHEQKMSI LNMVLKKHPS CTVPIGSEDQ KFIFYVGFRQ
FEAHAVLSSN TPGDKFKLER FMPTEKTFVA TVYAPITFNP ATVLCFRQDD KGRQELVATG
SVLDTNPDRI VLKRTVLSGH PYKINRRAVV VRYMFFNRED IDWFKPVELY TPSGRRGHIK
EAVGTHGHMK CRFDQQLNAQ DSVMLNLYKR VFPVWDYSLF NRNLNPSRFV ERSRVESISL
VQEDAMEE