C4_ORYSJ
ID C4_ORYSJ Reviewed; 94 AA.
AC Q6ZFW0; C7J5F0; Q40661;
DT 08-JUN-2016, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 25-MAY-2022, entry version 98.
DE RecName: Full=Non-specific lipid-transfer protein C4 {ECO:0000305};
DE Short=OsC4 {ECO:0000303|PubMed:1463854};
DE Flags: Precursor;
GN Name=C4 {ECO:0000305};
GN OrderedLocusNames=Os08g0546300 {ECO:0000312|EMBL:BAT06541.1};
GN ORFNames=OJ1323_A06.22 {ECO:0000312|EMBL:BAD09233.1},
GN OsJ_28169 {ECO:0000312|EMBL:EEE69101.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND DEVELOPMENTAL STAGE.
RX PubMed=1463854; DOI=10.1007/bf00028907;
RA Tsuchiya T., Toriyama K., Nasrallah M.E., Ejiri S.;
RT "Isolation of genes abundantly expressed in rice anthers at the microspore
RT stage.";
RL Plant Mol. Biol. 20:1189-1193(1992).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION.
RX PubMed=16141453; DOI=10.1105/tpc.105.034090;
RA Jung K.H., Han M.J., Lee Y.S., Kim Y.W., Hwang I., Kim M.J., Kim Y.K.,
RA Nahm B.H., An G.;
RT "Rice undeveloped tapetum1 is a major regulator of early tapetum
RT development.";
RL Plant Cell 17:2705-2722(2005).
CC -!- FUNCTION: Lipid-transfer protein that may be regulated by the
CC transcription factor UDT1 in developing anthers and play a role in
CC tapetum development. {ECO:0000269|PubMed:16141453}.
CC -!- DEVELOPMENTAL STAGE: During anther development, expressed in tapetal
CC cells of immature anthers, but not in the microspores or mature pollen.
CC {ECO:0000269|PubMed:1463854}.
CC -!- SIMILARITY: Belongs to the plant LTP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA04695.1; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
CC Sequence=BAH94409.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; D21159; BAA04695.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP004163; BAD09233.1; -; Genomic_DNA.
DR EMBL; AP008214; BAH94409.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014964; BAT06541.1; -; Genomic_DNA.
DR EMBL; CM000145; EEE69101.1; -; Genomic_DNA.
DR EMBL; AK064717; BAG89170.1; -; mRNA.
DR EMBL; AK119794; BAG99796.1; -; mRNA.
DR PIR; S28607; S28607.
DR RefSeq; XP_015650280.1; XM_015794794.1.
DR AlphaFoldDB; Q6ZFW0; -.
DR SMR; Q6ZFW0; -.
DR STRING; 4530.OS08T0546300-01; -.
DR PaxDb; Q6ZFW0; -.
DR EnsemblPlants; Os08t0546300-01; Os08t0546300-01; Os08g0546300.
DR GeneID; 9270168; -.
DR Gramene; Os08t0546300-01; Os08t0546300-01; Os08g0546300.
DR KEGG; osa:9270168; -.
DR eggNOG; ENOG502S7SH; Eukaryota.
DR HOGENOM; CLU_177257_0_0_1; -.
DR InParanoid; Q6ZFW0; -.
DR OMA; ISRECAC; -.
DR OrthoDB; 1629921at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000007752; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR GO; GO:0008289; F:lipid binding; IEA:UniProtKB-KW.
DR Gene3D; 1.10.110.10; -; 1.
DR InterPro; IPR036312; Bifun_inhib/LTP/seed_sf.
DR InterPro; IPR016140; Bifunc_inhib/LTP/seed_store.
DR Pfam; PF00234; Tryp_alpha_amyl; 1.
DR SMART; SM00499; AAI; 1.
DR SUPFAM; SSF47699; SSF47699; 1.
PE 2: Evidence at transcript level;
KW Disulfide bond; Glycoprotein; Lipid-binding; Reference proteome; Signal.
FT SIGNAL 1..26
FT /evidence="ECO:0000255"
FT CHAIN 27..94
FT /note="Non-specific lipid-transfer protein C4"
FT /id="PRO_0000436474"
FT CARBOHYD 91
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT DISULFID 34..72
FT /evidence="ECO:0000250|UniProtKB:Q0IQK9"
FT DISULFID 44..59
FT /evidence="ECO:0000250|UniProtKB:Q0IQK9"
FT DISULFID 60..85
FT /evidence="ECO:0000250|UniProtKB:Q0IQK9"
FT DISULFID 70..92
FT /evidence="ECO:0000250|UniProtKB:Q0IQK9"
FT CONFLICT 18
FT /note="V -> M (in Ref. 1; BAA04695)"
FT /evidence="ECO:0000305"
FT CONFLICT 33
FT /note="E -> K (in Ref. 1; BAA04695)"
FT /evidence="ECO:0000305"
FT CONFLICT 39
FT /note="N -> K (in Ref. 1; BAA04695)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 94 AA; 9082 MW; 0E466BB4F13C2EBD CRC64;
MAASKGNAAA AACALVLVLL AVGAEAQGGG GGECVPQLNR LLACRAYAVP GAGDPSAECC
SALSSISQGC ACSAISIMNS LPSRCHLSQI NCSA
