C6_ORYSJ
ID C6_ORYSJ Reviewed; 132 AA.
AC Q2R222; Q40662;
DT 08-JUN-2016, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Non-specific lipid-transfer protein C6 {ECO:0000305};
DE Short=OsC6 {ECO:0000303|PubMed:1463854};
DE Flags: Precursor;
GN Name=C6 {ECO:0000305};
GN OrderedLocusNames=Os11g0582500 {ECO:0000312|EMBL:BAF28521.1},
GN LOC_Os11g37280 {ECO:0000312|EMBL:ABA94557.1};
GN ORFNames=OsJ_34386 {ECO:0000312|EMBL:EAZ18849.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND DEVELOPMENTAL STAGE.
RX PubMed=1463854; DOI=10.1007/bf00028907;
RA Tsuchiya T., Toriyama K., Nasrallah M.E., Ejiri S.;
RT "Isolation of genes abundantly expressed in rice anthers at the microspore
RT stage.";
RL Plant Mol. Biol. 20:1189-1193(1992).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [8]
RP FUNCTION.
RX PubMed=16141453; DOI=10.1105/tpc.105.034090;
RA Jung K.H., Han M.J., Lee Y.S., Kim Y.W., Hwang I., Kim M.J., Kim Y.K.,
RA Nahm B.H., An G.;
RT "Rice undeveloped tapetum1 is a major regulator of early tapetum
RT development.";
RL Plant Cell 17:2705-2722(2005).
RN [9]
RP FUNCTION.
RX PubMed=17138695; DOI=10.1105/tpc.106.044107;
RA Li N., Zhang D.S., Liu H.S., Yin C.S., Li X.X., Liang W.Q., Yuan Z., Xu B.,
RA Chu H.W., Wang J., Wen T.Q., Huang H., Luo D., Ma H., Zhang D.B.;
RT "The rice tapetum degeneration retardation gene is required for tapetum
RT degradation and anther development.";
RL Plant Cell 18:2999-3014(2006).
RN [10]
RP FUNCTION, SUBCELLULAR LOCATION, AND DEVELOPMENTAL STAGE.
RX PubMed=20610705; DOI=10.1104/pp.110.158865;
RA Zhang D., Liang W., Yin C., Zong J., Gu F., Zhang D.;
RT "OsC6, encoding a lipid transfer protein, is required for postmeiotic
RT anther development in rice.";
RL Plant Physiol. 154:149-162(2010).
CC -!- FUNCTION: Lipid-transfer proteins that possesses lipid-binding activity
CC in vitro. Involved in the development of lipidic orbicules/Ubisch
CC bodies and pollen exine during anther development (PubMed:20610705).
CC May be regulated by the transcription factor UDT1 in developing anthers
CC and play a role in tapetum development (PubMed:16141453). Positively
CC regulated by the transcription factor TDR in developing anthers and may
CC play a role in tapetum programmed cell death (PCD) (PubMed:17138695).
CC {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:17138695,
CC ECO:0000269|PubMed:20610705}.
CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000269|PubMed:20610705}. Secreted,
CC extracellular space {ECO:0000269|PubMed:20610705}.
CC -!- DEVELOPMENTAL STAGE: During anther development, expressed in tapetal
CC cells of immature anthers, but not in mature pollen (PubMed:1463854,
CC PubMed:20610705). Weakly expressed in microspores from stage 9 to stage
CC 11 of anther development (PubMed:20610705).
CC {ECO:0000269|PubMed:1463854, ECO:0000269|PubMed:20610705}.
CC -!- SIMILARITY: Belongs to the plant LTP family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA04696.1; Type=Miscellaneous discrepancy; Note=Sequencing errors.; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; D21160; BAA04696.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000010; ABA94557.1; -; Genomic_DNA.
DR EMBL; AP008217; BAF28521.1; -; Genomic_DNA.
DR EMBL; AP014967; BAT14613.1; -; Genomic_DNA.
DR EMBL; CM000148; EAZ18849.1; -; Genomic_DNA.
DR EMBL; AK064672; BAG89152.1; -; mRNA.
DR PIR; T03603; T03603.
DR RefSeq; XP_015615738.1; XM_015760252.1.
DR AlphaFoldDB; Q2R222; -.
DR PaxDb; Q2R222; -.
DR PRIDE; Q2R222; -.
DR EnsemblPlants; Os11t0582500-01; Os11t0582500-01; Os11g0582500.
DR GeneID; 4350790; -.
DR Gramene; Os11t0582500-01; Os11t0582500-01; Os11g0582500.
DR KEGG; osa:4350790; -.
DR eggNOG; ENOG502R70Z; Eukaryota.
DR HOGENOM; CLU_107374_1_0_1; -.
DR InParanoid; Q2R222; -.
DR OMA; RMHAYEC; -.
DR OrthoDB; 1532272at2759; -.
DR PlantReactome; R-OSA-8986768; Anther and pollen development.
DR Proteomes; UP000000763; Chromosome 11.
DR Proteomes; UP000007752; Chromosome 11.
DR Proteomes; UP000059680; Chromosome 11.
DR GO; GO:0005615; C:extracellular space; IDA:UniProtKB.
DR GO; GO:0008289; F:lipid binding; IDA:UniProtKB.
DR GO; GO:0010584; P:pollen exine formation; IMP:UniProtKB.
DR Gene3D; 1.10.110.10; -; 1.
DR InterPro; IPR036312; Bifun_inhib/LTP/seed_sf.
DR InterPro; IPR016140; Bifunc_inhib/LTP/seed_store.
DR InterPro; IPR043325; LTSS.
DR PANTHER; PTHR33044; PTHR33044; 1.
DR Pfam; PF14368; LTP_2; 1.
DR SUPFAM; SSF47699; SSF47699; 1.
PE 2: Evidence at transcript level;
KW Disulfide bond; Glycoprotein; Lipid-binding; Reference proteome; Secreted;
KW Signal.
FT SIGNAL 1..27
FT /evidence="ECO:0000255"
FT CHAIN 28..132
FT /note="Non-specific lipid-transfer protein C6"
FT /id="PRO_5007208632"
FT CARBOHYD 78
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00498"
FT DISULFID 32..74
FT /evidence="ECO:0000250|UniProtKB:Q0IQK9"
FT DISULFID 42..58
FT /evidence="ECO:0000250|UniProtKB:Q0IQK9"
FT DISULFID 59..102
FT /evidence="ECO:0000250|UniProtKB:Q0IQK9"
FT DISULFID 72..127
FT /evidence="ECO:0000250|UniProtKB:Q0IQK9"
SQ SEQUENCE 132 AA; 13160 MW; D3C0388E31F99B1F CRC64;
MAPSKSTAAA GVLLVLLVAA AGGGAEAAAT TCVASLLELS PCLPFFKDKA ATAAPEGCCA
GLSSIVKGEA VCLCHIVNHT LERAIGVDIP VDRAFALLRD VCRLSPPADI ISTCANEKGG
VPPLYSCPAP SA
