U1125_ARATH
ID U1125_ARATH Reviewed; 165 AA.
AC Q84WS8; Q9SFC8;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2003, sequence version 1.
DT 03-AUG-2022, entry version 109.
DE RecName: Full=U11/U12 small nuclear ribonucleoprotein 25 kDa protein;
DE Short=U11/U12 snRNP 25 kDa protein;
DE Short=U11/U12-25K;
GN Name=SNRNP25; OrderedLocusNames=At3g07860; ORFNames=F17A17.20;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Cheuk R., Chen H., Kim C.J., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP IDENTIFICATION.
RX PubMed=15987817; DOI=10.1261/rna.2440305;
RA Lorkovic Z.J., Lehner R., Forstner C., Barta A.;
RT "Evolutionary conservation of minor U12-type spliceosome between plants and
RT humans.";
RL RNA 11:1095-1107(2005).
CC -!- SUBUNIT: Component of the U11/U12 snRNPs that are part of the U12-type
CC spliceosome. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAF21196.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC013483; AAF21196.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002686; AEE74612.1; -; Genomic_DNA.
DR EMBL; CP002686; ANM63464.1; -; Genomic_DNA.
DR EMBL; BT002826; AAO22645.1; -; mRNA.
DR EMBL; BT014863; AAT41846.1; -; mRNA.
DR RefSeq; NP_001325550.1; NM_001337747.1.
DR RefSeq; NP_187443.2; NM_111665.3.
DR AlphaFoldDB; Q84WS8; -.
DR SMR; Q84WS8; -.
DR STRING; 3702.AT3G07860.1; -.
DR PaxDb; Q84WS8; -.
DR PRIDE; Q84WS8; -.
DR ProteomicsDB; 242604; -.
DR EnsemblPlants; AT3G07860.1; AT3G07860.1; AT3G07860.
DR EnsemblPlants; AT3G07860.3; AT3G07860.3; AT3G07860.
DR GeneID; 819977; -.
DR Gramene; AT3G07860.1; AT3G07860.1; AT3G07860.
DR Gramene; AT3G07860.3; AT3G07860.3; AT3G07860.
DR KEGG; ath:AT3G07860; -.
DR Araport; AT3G07860; -.
DR TAIR; locus:2077447; AT3G07860.
DR eggNOG; ENOG502RXSI; Eukaryota.
DR HOGENOM; CLU_094998_2_0_1; -.
DR InParanoid; Q84WS8; -.
DR OMA; WRTYHLV; -.
DR OrthoDB; 1549734at2759; -.
DR PhylomeDB; Q84WS8; -.
DR PRO; PR:Q84WS8; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q84WS8; baseline and differential.
DR Genevisible; Q84WS8; AT.
DR GO; GO:0005689; C:U12-type spliceosomal complex; IEA:InterPro.
DR GO; GO:0000398; P:mRNA splicing, via spliceosome; IEA:InterPro.
DR CDD; cd17058; Ubl_SNRNP25; 1.
DR InterPro; IPR039690; SNRNP25.
DR InterPro; IPR040610; SNRNP25_ubiquitin.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR PANTHER; PTHR14942; PTHR14942; 1.
DR Pfam; PF18036; Ubiquitin_4; 1.
DR SUPFAM; SSF54236; SSF54236; 1.
PE 2: Evidence at transcript level;
KW mRNA processing; mRNA splicing; Nucleus; Reference proteome;
KW Ribonucleoprotein; Spliceosome.
FT CHAIN 1..165
FT /note="U11/U12 small nuclear ribonucleoprotein 25 kDa
FT protein"
FT /id="PRO_0000429833"
FT DOMAIN 52..137
FT /note="Ubiquitin-like"
FT REGION 145..165
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 165 AA; 18673 MW; 6DEB091CB05D1F45 CRC64;
MESGDYDVET KREKLKSVLS QLLADPILAD VPRNPTLSDV VTLVSLEKGS AMRLSVVKLD
GSSLDVAVMN SATLKDLKLL IKKKVNEMEQ ANMGHRHISW KHVWSNFCLS CNNEKLLDDN
AVLQDVGIRN NSQVTFMPYV MKKGRGRHSK RKKHRLFRSL HKTSS
