U1159_ARATH
ID U1159_ARATH Reviewed; 382 AA.
AC Q8VYD3; O82349;
DT 09-JUL-2014, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2002, sequence version 1.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=U11/U12 small nuclear ribonucleoprotein 59 kDa protein;
DE Short=U11/U12 snRNP 59 kDa protein;
DE Short=U11/U12-59K;
GN Name=SNRNP59; OrderedLocusNames=At2g46200; ORFNames=T3F17.15;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP IDENTIFICATION.
RX PubMed=15987817; DOI=10.1261/rna.2440305;
RA Lorkovic Z.J., Lehner R., Forstner C., Barta A.;
RT "Evolutionary conservation of minor U12-type spliceosome between plants and
RT humans.";
RL RNA 11:1095-1107(2005).
CC -!- SUBUNIT: Component of the U11/U12 snRNPs that are part of the U12-type
CC spliceosome. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAC62886.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC005397; AAC62886.1; ALT_SEQ; Genomic_DNA.
DR EMBL; CP002685; AEC10655.1; -; Genomic_DNA.
DR EMBL; CP002685; AEC10656.1; -; Genomic_DNA.
DR EMBL; AY072162; AAL59984.1; -; mRNA.
DR EMBL; AY096418; AAM20058.1; -; mRNA.
DR PIR; H84899; H84899.
DR RefSeq; NP_001324669.1; NM_001337179.1.
DR RefSeq; NP_850448.1; NM_180117.2.
DR RefSeq; NP_973696.1; NM_201967.2.
DR AlphaFoldDB; Q8VYD3; -.
DR STRING; 3702.AT2G46200.2; -.
DR PaxDb; Q8VYD3; -.
DR PRIDE; Q8VYD3; -.
DR ProteomicsDB; 234640; -.
DR EnsemblPlants; AT2G46200.1; AT2G46200.1; AT2G46200.
DR EnsemblPlants; AT2G46200.2; AT2G46200.2; AT2G46200.
DR GeneID; 819227; -.
DR Gramene; AT2G46200.1; AT2G46200.1; AT2G46200.
DR Gramene; AT2G46200.2; AT2G46200.2; AT2G46200.
DR KEGG; ath:AT2G46200; -.
DR Araport; AT2G46200; -.
DR TAIR; locus:2062944; AT2G46200.
DR eggNOG; ENOG502QVX1; Eukaryota.
DR HOGENOM; CLU_038993_1_0_1; -.
DR InParanoid; Q8VYD3; -.
DR OMA; PPWSSRW; -.
DR OrthoDB; 939058at2759; -.
DR PhylomeDB; Q8VYD3; -.
DR PRO; PR:Q8VYD3; -.
DR Proteomes; UP000006548; Chromosome 2.
DR ExpressionAtlas; Q8VYD3; baseline and differential.
DR Genevisible; Q8VYD3; AT.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR InterPro; IPR031974; PDCD7.
DR Pfam; PF16021; PDCD7; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; mRNA processing; mRNA splicing; Nucleus; Reference proteome;
KW Ribonucleoprotein; Spliceosome.
FT CHAIN 1..382
FT /note="U11/U12 small nuclear ribonucleoprotein 59 kDa
FT protein"
FT /id="PRO_0000429828"
FT REGION 274..297
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 31..63
FT /evidence="ECO:0000255"
SQ SEQUENCE 382 AA; 44031 MW; 5BFFC824E1CF7805 CRC64;
MNPANFQPPN PPFHWAPMLP PDPPRCGMFW NTKNITDQLK QLQDTLNLAK SMEKELEALK
MIKDAKGSVE NAVQDSGVEY LEARKMDLGQ QEMLSVDAAN SLMSTLRAQL EPFRFVVDEN
SPWEEKSAAV RLTCKMKKSI RNKLWKKRKR RCAAEMRAKE PERFEQADRE ADEWREKEMA
KDMANRKVDE MKAIEKIKAK RERKRLEPEL ELALIVEEMQ ELRSLRIEKL KKQGHFLPEE
DDKFFESVRA AVEQEENQAQ SLINTETEEH VIASEENTTL TTSNKTNNDT DKDSNTNAAS
CERTMKAPDN GCDNISNLPV EVYHYYYGSN IDMGRLIEIR REWDAYLSAG GSRIPGHWVQ
PSPPANEIWA SCLVNTPKRD LS
