U376D_CAEEL
ID U376D_CAEEL Reviewed; 219 AA.
AC O16406;
DT 05-SEP-2006, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 03-AUG-2022, entry version 107.
DE RecName: Full=UPF0376 protein C36C5.12;
GN ORFNames=C36C5.12;
OS Caenorhabditis elegans.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=6239;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Bristol N2;
RX PubMed=9851916; DOI=10.1126/science.282.5396.2012;
RG The C. elegans sequencing consortium;
RT "Genome sequence of the nematode C. elegans: a platform for investigating
RT biology.";
RL Science 282:2012-2018(1998).
RN [2]
RP GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-104, AND IDENTIFICATION BY MASS
RP SPECTROMETRY.
RC STRAIN=Bristol N2;
RX PubMed=12754521; DOI=10.1038/nbt829;
RA Kaji H., Saito H., Yamauchi Y., Shinkawa T., Taoka M., Hirabayashi J.,
RA Kasai K., Takahashi N., Isobe T.;
RT "Lectin affinity capture, isotope-coded tagging and mass spectrometry to
RT identify N-linked glycoproteins.";
RL Nat. Biotechnol. 21:667-672(2003).
RN [3]
RP GLYCOSYLATION [LARGE SCALE ANALYSIS] AT ASN-104, AND IDENTIFICATION BY MASS
RP SPECTROMETRY.
RC STRAIN=Bristol N2;
RX PubMed=17761667; DOI=10.1074/mcp.m600392-mcp200;
RA Kaji H., Kamiie J., Kawakami H., Kido K., Yamauchi Y., Shinkawa T.,
RA Taoka M., Takahashi N., Isobe T.;
RT "Proteomics reveals N-linked glycoprotein diversity in Caenorhabditis
RT elegans and suggests an atypical translocation mechanism for integral
RT membrane proteins.";
RL Mol. Cell. Proteomics 6:2100-2109(2007).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass type II
CC membrane protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the UPF0376 family. {ECO:0000305}.
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DR EMBL; FO080796; CCD66864.1; -; Genomic_DNA.
DR PIR; D88990; D88990.
DR RefSeq; NP_503869.2; NM_071468.2.
DR AlphaFoldDB; O16406; -.
DR BioGRID; 48098; 1.
DR STRING; 6239.C36C5.12; -.
DR iPTMnet; O16406; -.
DR PaxDb; O16406; -.
DR PeptideAtlas; O16406; -.
DR EnsemblMetazoa; C36C5.12.1; C36C5.12.1; WBGene00016481.
DR EnsemblMetazoa; C36C5.12.2; C36C5.12.2; WBGene00016481.
DR GeneID; 183268; -.
DR KEGG; cel:CELE_C36C5.12; -.
DR UCSC; C36C5.12; c. elegans.
DR CTD; 183268; -.
DR WormBase; C36C5.12; CE51178; WBGene00016481; -.
DR eggNOG; ENOG502THJ5; Eukaryota.
DR GeneTree; ENSGT00970000195826; -.
DR HOGENOM; CLU_078890_1_0_1; -.
DR InParanoid; O16406; -.
DR OMA; KEDEHRN; -.
DR PhylomeDB; O16406; -.
DR PRO; PR:O16406; -.
DR Proteomes; UP000001940; Chromosome V.
DR Bgee; WBGene00016481; Expressed in adult organism and 1 other tissue.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR002542; DUF19.
DR InterPro; IPR016638; UPF0376.
DR Pfam; PF01579; DUF19; 1.
DR PIRSF; PIRSF015697; UCP015697; 1.
PE 1: Evidence at protein level;
KW Glycoprotein; Membrane; Reference proteome; Signal-anchor; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..219
FT /note="UPF0376 protein C36C5.12"
FT /id="PRO_0000248558"
FT TOPO_DOM 1..20
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 21..43
FT /note="Helical; Signal-anchor for type II membrane protein"
FT /evidence="ECO:0000255"
FT TOPO_DOM 44..219
FT /note="Extracellular"
FT /evidence="ECO:0000255"
FT CARBOHYD 104
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000269|PubMed:12754521,
FT ECO:0000269|PubMed:17761667"
FT CARBOHYD 204
FT /note="N-linked (GlcNAc...) asparagine"
FT /evidence="ECO:0000255"
SQ SEQUENCE 219 AA; 25309 MW; 0B7488D3F392475C CRC64;
MGRLDVKNSW IEFHQDEMTS FLKLAIIGTV LLGVAHGANL TAAEKETYCE LRSAIQTFLC
IERLRDFAAK VDELDMDKKS ELKEFKKTCD SLKNCFAITR CGPNSTMDEA ELFRMVEKNC
EAVVYIHEDF SDCSDKLTAK KSVCFDNWDP IPDGIHLEED EKKVEKMKKE TCKRYFGKDD
CMKKEIVETC SQKEWDKFRE QFINLSSDLV SKCDFSRLG