U496A_ARATH
ID U496A_ARATH Reviewed; 374 AA.
AC Q9SYZ7;
DT 02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 25-MAY-2022, entry version 92.
DE RecName: Full=UPF0496 protein At4g34320;
GN OrderedLocusNames=At4g34320; ORFNames=F10M10.90;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10617198; DOI=10.1038/47134;
RA Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
RA Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B.,
RA Ansorge W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M.,
RA de Simone V., Obermaier B., Mache R., Mueller M., Kreis M., Delseny M.,
RA Puigdomenech P., Watson M., Schmidtheini T., Reichert B., Portetelle D.,
RA Perez-Alonso M., Boutry M., Bancroft I., Vos P., Hoheisel J.,
RA Zimmermann W., Wedler H., Ridley P., Langham S.-A., McCullagh B.,
RA Bilham L., Robben J., van der Schueren J., Grymonprez B., Chuang Y.-J.,
RA Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R.,
RA Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
RA Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W., Mooijman P.,
RA Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser S., Hempel S.,
RA Feldpausch M., Lamberth S., Van den Daele H., De Keyser A., Buysshaert C.,
RA Gielen J., Villarroel R., De Clercq R., van Montagu M., Rogers J.,
RA Cronin A., Quail M.A., Bray-Allen S., Clark L., Doggett J., Hall S.,
RA Kay M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A.,
RA Lyne M., Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M.,
RA Grimm M., Loehnert T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D.,
RA Herzl A., Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
RA Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R., Schnabl S.,
RA Hiller R., Schmidt W., Lecharny A., Aubourg S., Chefdor F., Cooke R.,
RA Berger C., Monfort A., Casacuberta E., Gibbons T., Weber N., Vandenbol M.,
RA Bargues M., Terol J., Torres A., Perez-Perez A., Purnelle B., Bent E.,
RA Johnson S., Tacon D., Jesse T., Heijnen L., Schwarz S., Scholler P.,
RA Heber S., Francs P., Bielke C., Frishman D., Haase D., Lemcke K.,
RA Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson R.K.,
RA de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz K.,
RA Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M.,
RA Abu-Threideh J., Stoneking T., Kalicki J., Graves T., Harmon G.,
RA Edwards J., Latreille P., Courtney L., Cloud J., Abbott A., Scott K.,
RA Johnson D., Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
RA Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
RA Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D., Du H.,
RA Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C., Antonoiu B.,
RA Zidanic M., Strong C., Sun H., Lamar B., Yordan C., Ma P., Zhong J.,
RA Preston R., Vil D., Shekher M., Matero A., Shah R., Swaby I.K.,
RA O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat S., Shohdy N.,
RA Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra M.A.,
RA Martienssen R., McCombie W.R.;
RT "Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
RL Nature 402:769-777(1999).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14993207; DOI=10.1101/gr.1515604;
RA Castelli V., Aury J.-M., Jaillon O., Wincker P., Clepet C., Menard M.,
RA Cruaud C., Quetier F., Scarpelli C., Schaechter V., Temple G., Caboche M.,
RA Weissenbach J., Salanoubat M.;
RT "Whole genome sequence comparisons and 'full-length' cDNA sequences: a
RT combined approach to evaluate and improve Arabidopsis genome annotation.";
RL Genome Res. 14:406-413(2004).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the UPF0496 family. {ECO:0000305}.
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DR EMBL; AL035521; CAB36709.1; -; Genomic_DNA.
DR EMBL; AL161585; CAB80149.1; -; Genomic_DNA.
DR EMBL; CP002687; AEE86359.1; -; Genomic_DNA.
DR EMBL; CP002687; ANM66891.1; -; Genomic_DNA.
DR EMBL; BX828285; -; NOT_ANNOTATED_CDS; mRNA.
DR PIR; T04778; T04778.
DR RefSeq; NP_001328759.1; NM_001342278.1.
DR RefSeq; NP_195158.1; NM_119597.4.
DR AlphaFoldDB; Q9SYZ7; -.
DR SMR; Q9SYZ7; -.
DR iPTMnet; Q9SYZ7; -.
DR PaxDb; Q9SYZ7; -.
DR PRIDE; Q9SYZ7; -.
DR ProteomicsDB; 228707; -.
DR DNASU; 829582; -.
DR EnsemblPlants; AT4G34320.1; AT4G34320.1; AT4G34320.
DR EnsemblPlants; AT4G34320.2; AT4G34320.2; AT4G34320.
DR GeneID; 829582; -.
DR Gramene; AT4G34320.1; AT4G34320.1; AT4G34320.
DR Gramene; AT4G34320.2; AT4G34320.2; AT4G34320.
DR KEGG; ath:AT4G34320; -.
DR Araport; AT4G34320; -.
DR TAIR; locus:2116214; AT4G34320.
DR eggNOG; ENOG502QQBT; Eukaryota.
DR HOGENOM; CLU_044778_0_0_1; -.
DR InParanoid; Q9SYZ7; -.
DR OMA; GCKEDIW; -.
DR OrthoDB; 1134085at2759; -.
DR PhylomeDB; Q9SYZ7; -.
DR PRO; PR:Q9SYZ7; -.
DR Proteomes; UP000006548; Chromosome 4.
DR ExpressionAtlas; Q9SYZ7; baseline and differential.
DR Genevisible; Q9SYZ7; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR007749; DUF677.
DR PANTHER; PTHR31113; PTHR31113; 1.
DR Pfam; PF05055; DUF677; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..374
FT /note="UPF0496 protein At4g34320"
FT /id="PRO_0000306886"
FT TRANSMEM 215..235
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 238..258
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 374 AA; 42054 MW; F1D7D11E2CF7BDAE CRC64;
MGNQTSKKSQ ETSAKSVHYT TELRSYAAAC KADTELQSFD TCLQARTSHV ISTLATGVEV
RALSFDSLKE VTQCLLEMNQ EVVKVILDCK KDIWKNQEMF ELVEDYFENS LKTLDFCAAL
EKGLRRARDS HLLILVALQQ FEDESLVQGG NGYKKTLEEL KNFKDAESPF NEDFFKMFQS
VYKQQMLMLE KLQHRKNKLD KKLKCIHTWR KLSSIIFVAT FATVLICSVV AAAMAAPPVA
AALAAATAVP LGSMGKWIDS LWKNYENALK GQKEVISSMQ AGTFVAVKDL DNIRVLIERL
EIEITGMVKS AEFAVEHNAV KIGIDDIKKK LEVFKKNVEE LGTQADLCSR DIRRARTVIL
QRIIKHPNNA SSST
