U496C_ORYSJ
ID U496C_ORYSJ Reviewed; 378 AA.
AC Q10RR9; A0A0P0VT25; A3AE47; Q8H088; Q947Z5;
DT 02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 22-AUG-2006, sequence version 1.
DT 03-AUG-2022, entry version 69.
DE RecName: Full=UPF0496 protein 3;
GN OrderedLocusNames=Os03g0148000, LOC_Os03g05440;
GN ORFNames=OsJ_009069, OSJNBa0067N01.1, OSJNBb0050N02.3;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16109971; DOI=10.1101/gr.3869505;
RG The rice chromosome 3 sequencing consortium;
RA Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B.,
RA Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T.,
RA Fadrosh D., Bera J., Weaver B., Jin S., Johri S., Reardon M., Webb K.,
RA Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T.,
RA Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R.,
RA Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J.,
RA Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S.,
RA Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M.,
RA Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M.,
RA Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L.,
RA O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R.,
RA Jin W., Lee H.R., Jiang J., Jackson S.;
RT "Sequence, annotation, and analysis of synteny between rice chromosome 3
RT and diverged grass species.";
RL Genome Res. 15:1284-1291(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the UPF0496 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAK98722.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=AAN87731.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EAZ25586.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AC090485; AAK98722.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AC105734; AAN87731.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000009; ABF93987.1; -; Genomic_DNA.
DR EMBL; AP008209; BAF10879.1; -; Genomic_DNA.
DR EMBL; AP014959; BAS82296.1; -; Genomic_DNA.
DR EMBL; CM000140; EAZ25586.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK110468; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015632298.1; XM_015776812.1.
DR RefSeq; XP_015632299.1; XM_015776813.1.
DR AlphaFoldDB; Q10RR9; -.
DR SMR; Q10RR9; -.
DR STRING; 4530.OS03T0148000-01; -.
DR PaxDb; Q10RR9; -.
DR PRIDE; Q10RR9; -.
DR EnsemblPlants; Os03t0148000-01; Os03t0148000-01; Os03g0148000.
DR GeneID; 4331620; -.
DR Gramene; Os03t0148000-01; Os03t0148000-01; Os03g0148000.
DR KEGG; osa:4331620; -.
DR eggNOG; ENOG502QU17; Eukaryota.
DR HOGENOM; CLU_036033_0_0_1; -.
DR InParanoid; Q10RR9; -.
DR OMA; NDELEHM; -.
DR OrthoDB; 770905at2759; -.
DR Proteomes; UP000000763; Chromosome 3.
DR Proteomes; UP000007752; Chromosome 3.
DR Proteomes; UP000059680; Chromosome 3.
DR Genevisible; Q10RR9; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR007749; DUF677.
DR PANTHER; PTHR31113; PTHR31113; 1.
DR Pfam; PF05055; DUF677; 1.
PE 2: Evidence at transcript level;
KW Coiled coil; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..378
FT /note="UPF0496 protein 3"
FT /id="PRO_0000306909"
FT TRANSMEM 231..251
FT /note="Helical"
FT /evidence="ECO:0000255"
FT COILED 329..356
FT /evidence="ECO:0000255"
FT CONFLICT 182
FT /note="A -> T (in Ref. 6; AK110468)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 378 AA; 41406 MW; 571390A19A0B6EBF CRC64;
MGATFRCFGG CVKPDDQQVH EPKKVVAPSS SFDFREEYTS AFRTESYNDF WARVLDITLA
HGAALVPRHG GGGGCAASKR LPSYRLFAEH LLEPDQRAVA AALASPRGSR LRPDVRGLLA
AYYAETANAS FLCSHLLKDI EHIRLRYRPL KHTLRKLASD VGVSGLADVS AALGQPFTAL
AASQGRLREV QAGSGDLLRG LDAGRKKARH RIRSVARLRR ALSVSFVTAV AVVAVVGACI
GVHILAAFAA FPMMSPAWLG ERFFSGRAAR RALVQLEAAA KGTYILNRDM ETISRLVARV
RDEGEHMVAL RRLCVEHRPA AGAGGKGRLV QEVLRQLSKN EESFRQQLDE LEEHLFLCFM
TTNKARIMVM NFMAAAAR
