U496D_ORYSJ
ID U496D_ORYSJ Reviewed; 456 AA.
AC Q337C0; A3C6F6; B7ETR9; Q9FW77;
DT 02-OCT-2007, integrated into UniProtKB/Swiss-Prot.
DT 06-DEC-2005, sequence version 1.
DT 03-AUG-2022, entry version 70.
DE RecName: Full=UPF0496 protein 4;
GN OrderedLocusNames=Os10g0513300, LOC_Os10g36950;
GN ORFNames=OsJ_030878, OSJNBa0026L12.27;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12791992; DOI=10.1126/science.1083523;
RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S.,
RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D.,
RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M.,
RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F.,
RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M.,
RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R.,
RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F.,
RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D.,
RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R.,
RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K.,
RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S.,
RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S.,
RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R.,
RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M.,
RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E.,
RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
RT "In-depth view of structure, activity, and evolution of rice chromosome
RT 10.";
RL Science 300:1566-1569(2003).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Single-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the UPF0496 family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAG13509.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF26963.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EAZ16669.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AC068924; AAG13509.1; ALT_SEQ; Genomic_DNA.
DR EMBL; DP000086; ABB47882.1; -; Genomic_DNA.
DR EMBL; AP008216; BAF26963.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014966; BAT11638.1; -; Genomic_DNA.
DR EMBL; CM000147; EAZ16669.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK102890; BAG95766.1; -; mRNA.
DR RefSeq; XP_015614868.1; XM_015759382.1.
DR AlphaFoldDB; Q337C0; -.
DR SMR; Q337C0; -.
DR STRING; 4530.OS10T0513300-01; -.
DR PaxDb; Q337C0; -.
DR PRIDE; Q337C0; -.
DR EnsemblPlants; Os10t0513300-01; Os10t0513300-01; Os10g0513300.
DR GeneID; 4349103; -.
DR Gramene; Os10t0513300-01; Os10t0513300-01; Os10g0513300.
DR KEGG; osa:4349103; -.
DR eggNOG; ENOG502QPVM; Eukaryota.
DR HOGENOM; CLU_034894_0_0_1; -.
DR InParanoid; Q337C0; -.
DR OMA; GWRQHIG; -.
DR OrthoDB; 816771at2759; -.
DR Proteomes; UP000000763; Chromosome 10.
DR Proteomes; UP000007752; Chromosome 10.
DR Proteomes; UP000059680; Chromosome 10.
DR ExpressionAtlas; Q337C0; baseline and differential.
DR Genevisible; Q337C0; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR InterPro; IPR008511; ROH1-like.
DR Pfam; PF05633; BPS1; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..456
FT /note="UPF0496 protein 4"
FT /id="PRO_0000306911"
FT TRANSMEM 195..217
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 368..390
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 369..389
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 456 AA; 49737 MW; 17A0647EC5E489CF CRC64;
MSRAHGSPRS FFPVGNPFRV MFPGGAHLSR KLQELLASYE DALALSLRKL KPEAASDVLT
LSWMRLAVDC LSELHTNIAN LITDLELPVS DWDDKWVDIY LNSSVKLLDI CIALSSELSR
LDQGQLLLQY ALHVLGSESG VPSQEQLKRA EPSLREWMEL VGVRCARLVS CSATLQELAG
NLSLMKVKNS AKGKVLMRAL YGIESVTVFV CSIFVAVLSG SPKPLVELHV PEKFGWSQAF
NDLHTAVSEE LTRQLSGGSV AAVKELEEVE ACARRLHVLA STSQLEEEAA NLANAVSHTE
EEVMSDSIAQ EGDHHCGLKL ADDTTREGGI VISESIAEGG TQEAEMKKDI SYEKEVAMVE
RISYKEHQDS NVKQANGSSD ESALVVPERT SVQESKEELL NCISSMSKSA EGLRHGLDSL
SKRVGDFFQI VLTGRDALLC NLRISDAASK VAEVSS