U540A_ARATH
ID U540A_ARATH Reviewed; 148 AA.
AC Q39168;
DT 18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1996, sequence version 1.
DT 25-MAY-2022, entry version 96.
DE RecName: Full=UPF0540 protein At1g62000;
DE Flags: Precursor;
GN OrderedLocusNames=At1g62000; ORFNames=F8K4.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RA Grellet F., Cooke R., Laudie M., Raynal M., Delseny M.;
RL Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Kim C.J., Chen H., Cheuk R.F., Shinn P., Ecker J.R.;
RT "Arabidopsis ORF clones.";
RL Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the UPF0540 family. {ECO:0000305}.
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DR EMBL; X91954; CAA63020.1; -; mRNA.
DR EMBL; AC004392; AAC28515.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33912.1; -; Genomic_DNA.
DR EMBL; BT010584; AAQ89606.1; -; mRNA.
DR EMBL; BT020616; AAW81724.1; -; mRNA.
DR EMBL; AK227274; BAE99298.1; -; mRNA.
DR PIR; T02144; T02144.
DR RefSeq; NP_176391.1; NM_104880.3.
DR AlphaFoldDB; Q39168; -.
DR iPTMnet; Q39168; -.
DR PaxDb; Q39168; -.
DR ProteomicsDB; 228673; -.
DR EnsemblPlants; AT1G62000.1; AT1G62000.1; AT1G62000.
DR GeneID; 842495; -.
DR Gramene; AT1G62000.1; AT1G62000.1; AT1G62000.
DR KEGG; ath:AT1G62000; -.
DR Araport; AT1G62000; -.
DR TAIR; locus:2036793; AT1G62000.
DR HOGENOM; CLU_1770577_0_0_1; -.
DR InParanoid; Q39168; -.
DR OMA; LVKKIIW; -.
DR OrthoDB; 1637988at2759; -.
DR PhylomeDB; Q39168; -.
DR PRO; PR:Q39168; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q39168; baseline and differential.
DR Genevisible; Q39168; AT.
DR GO; GO:0048046; C:apoplast; IDA:TAIR.
DR GO; GO:0010192; P:mucilage biosynthetic process; IEP:TAIR.
DR GO; GO:0010214; P:seed coat development; IEP:TAIR.
PE 2: Evidence at transcript level;
KW Reference proteome; Signal.
FT SIGNAL 1..21
FT /evidence="ECO:0000255"
FT CHAIN 22..148
FT /note="UPF0540 protein At1g62000"
FT /id="PRO_0000326469"
FT REGION 123..148
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 148 AA; 14872 MW; 9319242445D9CA55 CRC64;
MNATKFVVLL VIGILCAIVT ARQVKDLSTE TKLGASLPKT TTKGIGAQLS ATGTTYSTSS
VVSYANGFNN PKGPGANSFE SANTFTSGQV TAKGRKARVS STSASAAEGD AAAAVTRKAA
AARANGKVAS ASRVKGSSEK KKGKGKKD