U540B_ARATH
ID U540B_ARATH Reviewed; 150 AA.
AC O04573;
DT 18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1997, sequence version 1.
DT 03-AUG-2022, entry version 94.
DE RecName: Full=UPF0540 protein At1g62060;
DE Flags: Precursor;
GN OrderedLocusNames=At1g62060; ORFNames=F19K23.1;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SIMILARITY: Belongs to the UPF0540 family. {ECO:0000305}.
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DR EMBL; AC000375; AAB60755.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33920.1; -; Genomic_DNA.
DR EMBL; AY075629; AAL91639.1; -; mRNA.
DR EMBL; AY125570; AAM78080.1; -; mRNA.
DR PIR; A96647; A96647.
DR RefSeq; NP_176397.1; NM_104887.3.
DR AlphaFoldDB; O04573; -.
DR STRING; 3702.AT1G62060.1; -.
DR iPTMnet; O04573; -.
DR PaxDb; O04573; -.
DR PRIDE; O04573; -.
DR ProteomicsDB; 228640; -.
DR EnsemblPlants; AT1G62060.1; AT1G62060.1; AT1G62060.
DR GeneID; 842502; -.
DR Gramene; AT1G62060.1; AT1G62060.1; AT1G62060.
DR KEGG; ath:AT1G62060; -.
DR Araport; AT1G62060; -.
DR TAIR; locus:2018077; AT1G62060.
DR HOGENOM; CLU_1770577_0_0_1; -.
DR InParanoid; O04573; -.
DR OMA; RMAYGYS; -.
DR OrthoDB; 1619648at2759; -.
DR PhylomeDB; O04573; -.
DR PRO; PR:O04573; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O04573; baseline and differential.
DR Genevisible; O04573; AT.
DR GO; GO:0048046; C:apoplast; IDA:TAIR.
DR GO; GO:0010192; P:mucilage biosynthetic process; IEP:TAIR.
DR GO; GO:0010214; P:seed coat development; IEP:TAIR.
PE 2: Evidence at transcript level;
KW Reference proteome; Signal.
FT SIGNAL 1..21
FT /evidence="ECO:0000255"
FT CHAIN 22..150
FT /note="UPF0540 protein At1g62060"
FT /id="PRO_0000326470"
FT REGION 57..82
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 119..150
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 150 AA; 14969 MW; 2AAA5143DA033E88 CRC64;
MNATKFVVLL VIGILCAIVT ARQVEEVSKE TKLGTSLPKS TNKGIGAQLS AAGLTYSGSS
VSSSASAFNN PKGPGASASE SGYTSTIGQV IAKGRKARVS SASASAATGE AAAAVTRKAA
AARAKGKVAS ASRVKGSSEK KKKDHKGKKD