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U540C_ARATH
ID   U540C_ARATH             Reviewed;         150 AA.
AC   O04575; Q39167;
DT   18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
DT   01-JUL-1997, sequence version 1.
DT   03-AUG-2022, entry version 91.
DE   RecName: Full=UPF0540 protein At1g62080;
DE   Flags: Precursor;
GN   OrderedLocusNames=At1g62080; ORFNames=F19K23.3, F19K23_29;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. Columbia;
RA   Grellet F., Cooke R., Laudie M., Raynal M., Delseny M.;
RL   Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130712; DOI=10.1038/35048500;
RA   Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA   Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA   Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA   Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA   Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA   Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA   Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA   Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA   Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA   Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA   Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA   Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA   Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA   Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA   Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT   "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL   Nature 408:816-820(2000).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RX   PubMed=27862469; DOI=10.1111/tpj.13415;
RA   Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA   Town C.D.;
RT   "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT   genome.";
RL   Plant J. 89:789-804(2017).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=14593172; DOI=10.1126/science.1088305;
RA   Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA   Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA   Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA   Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA   Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA   Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA   Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA   Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA   Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA   Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA   Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA   Ecker J.R.;
RT   "Empirical analysis of transcriptional activity in the Arabidopsis
RT   genome.";
RL   Science 302:842-846(2003).
CC   -!- SIMILARITY: Belongs to the UPF0540 family. {ECO:0000305}.
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DR   EMBL; X91953; CAA63019.1; -; mRNA.
DR   EMBL; AC000375; AAB60757.1; -; Genomic_DNA.
DR   EMBL; CP002684; AEE33922.1; -; Genomic_DNA.
DR   EMBL; AY058148; AAL25564.1; -; mRNA.
DR   PIR; C96647; C96647.
DR   RefSeq; NP_564791.1; NM_104889.2.
DR   AlphaFoldDB; O04575; -.
DR   PaxDb; O04575; -.
DR   PRIDE; O04575; -.
DR   ProteomicsDB; 228641; -.
DR   EnsemblPlants; AT1G62080.1; AT1G62080.1; AT1G62080.
DR   GeneID; 842504; -.
DR   Gramene; AT1G62080.1; AT1G62080.1; AT1G62080.
DR   KEGG; ath:AT1G62080; -.
DR   Araport; AT1G62080; -.
DR   TAIR; locus:2018072; AT1G62080.
DR   HOGENOM; CLU_1770577_0_0_1; -.
DR   InParanoid; O04575; -.
DR   OMA; CARQPEE; -.
DR   OrthoDB; 1619648at2759; -.
DR   PhylomeDB; O04575; -.
DR   PRO; PR:O04575; -.
DR   Proteomes; UP000006548; Chromosome 1.
DR   Genevisible; O04575; AT.
DR   GO; GO:0048046; C:apoplast; IDA:TAIR.
DR   GO; GO:0010192; P:mucilage biosynthetic process; IEP:TAIR.
DR   GO; GO:0010214; P:seed coat development; IEP:TAIR.
PE   2: Evidence at transcript level;
KW   Reference proteome; Signal.
FT   SIGNAL          1..21
FT                   /evidence="ECO:0000255"
FT   CHAIN           22..150
FT                   /note="UPF0540 protein At1g62080"
FT                   /id="PRO_0000326471"
FT   REGION          119..150
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        65
FT                   /note="A -> L (in Ref. 1; CAA63019)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        96
FT                   /note="K -> N (in Ref. 1; CAA63019)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        149
FT                   /note="K -> N (in Ref. 1; CAA63019)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   150 AA;  15113 MW;  A679099B101103F7 CRC64;
     MNATKFLVLL VIGVLCAIVT ARQVKDLSTE TKLGASLPKT TTKGIGAQLS ATGSTFSSSS
     VVSYANGFNN PKGPGANAFE SGSTFTSGQV TAKGRKARVS SASASTATGE AAAAVTRKAA
     AARAKGKVAS ASRVKGSSEK KKKDRKGKKD
 
 
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