U540C_ARATH
ID U540C_ARATH Reviewed; 150 AA.
AC O04575; Q39167;
DT 18-MAR-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1997, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=UPF0540 protein At1g62080;
DE Flags: Precursor;
GN OrderedLocusNames=At1g62080; ORFNames=F19K23.3, F19K23_29;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RA Grellet F., Cooke R., Laudie M., Raynal M., Delseny M.;
RL Submitted (OCT-1995) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
CC -!- SIMILARITY: Belongs to the UPF0540 family. {ECO:0000305}.
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DR EMBL; X91953; CAA63019.1; -; mRNA.
DR EMBL; AC000375; AAB60757.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33922.1; -; Genomic_DNA.
DR EMBL; AY058148; AAL25564.1; -; mRNA.
DR PIR; C96647; C96647.
DR RefSeq; NP_564791.1; NM_104889.2.
DR AlphaFoldDB; O04575; -.
DR PaxDb; O04575; -.
DR PRIDE; O04575; -.
DR ProteomicsDB; 228641; -.
DR EnsemblPlants; AT1G62080.1; AT1G62080.1; AT1G62080.
DR GeneID; 842504; -.
DR Gramene; AT1G62080.1; AT1G62080.1; AT1G62080.
DR KEGG; ath:AT1G62080; -.
DR Araport; AT1G62080; -.
DR TAIR; locus:2018072; AT1G62080.
DR HOGENOM; CLU_1770577_0_0_1; -.
DR InParanoid; O04575; -.
DR OMA; CARQPEE; -.
DR OrthoDB; 1619648at2759; -.
DR PhylomeDB; O04575; -.
DR PRO; PR:O04575; -.
DR Proteomes; UP000006548; Chromosome 1.
DR Genevisible; O04575; AT.
DR GO; GO:0048046; C:apoplast; IDA:TAIR.
DR GO; GO:0010192; P:mucilage biosynthetic process; IEP:TAIR.
DR GO; GO:0010214; P:seed coat development; IEP:TAIR.
PE 2: Evidence at transcript level;
KW Reference proteome; Signal.
FT SIGNAL 1..21
FT /evidence="ECO:0000255"
FT CHAIN 22..150
FT /note="UPF0540 protein At1g62080"
FT /id="PRO_0000326471"
FT REGION 119..150
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 65
FT /note="A -> L (in Ref. 1; CAA63019)"
FT /evidence="ECO:0000305"
FT CONFLICT 96
FT /note="K -> N (in Ref. 1; CAA63019)"
FT /evidence="ECO:0000305"
FT CONFLICT 149
FT /note="K -> N (in Ref. 1; CAA63019)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 150 AA; 15113 MW; A679099B101103F7 CRC64;
MNATKFLVLL VIGVLCAIVT ARQVKDLSTE TKLGASLPKT TTKGIGAQLS ATGSTFSSSS
VVSYANGFNN PKGPGANAFE SGSTFTSGQV TAKGRKARVS SASASTATGE AAAAVTRKAA
AARAKGKVAS ASRVKGSSEK KKKDRKGKKD