U603_ARATH
ID U603_ARATH Reviewed; 285 AA.
AC Q9ZVL6;
DT 01-JUL-2008, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1999, sequence version 1.
DT 25-MAY-2022, entry version 113.
DE RecName: Full=UPF0603 protein At1g54780, chloroplastic;
DE AltName: Full=Thylakoid lumen 18.3 kDa protein;
DE Flags: Precursor;
GN OrderedLocusNames=At1g54780; ORFNames=T22H22.19;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Columbia;
RA Shahollari B., Oelmueller R.;
RT "Identification of a new lumenal protein associated with photosystem II.";
RL Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP PROTEIN SEQUENCE OF 85-94, AND SUBCELLULAR LOCATION.
RX PubMed=11719511; DOI=10.1074/jbc.m108575200;
RA Schubert M., Petersson U.A., Haas B.J., Funk C., Schroeder W.P.,
RA Kieselbach T.;
RT "Proteome map of the chloroplast lumen of Arabidopsis thaliana.";
RL J. Biol. Chem. 277:8354-8365(2002).
RN [8]
RP PROTEIN SEQUENCE OF N-TERMINUS, AND IDENTIFICATION BY MASS SPECTROMETRY.
RX PubMed=11826309; DOI=10.1105/tpc.010304;
RA Peltier J.-B., Emanuelsson O., Kalume D.E., Ytterberg J., Friso G.,
RA Rudella A., Liberles D.A., Soederberg L., Roepstorff P., von Heijne G.,
RA van Wijk K.J.;
RT "Central functions of the lumenal and peripheral thylakoid proteome of
RT Arabidopsis determined by experimentation and genome-wide prediction.";
RL Plant Cell 14:211-236(2002).
RN [9]
RP IDENTIFICATION BY MASS SPECTROMETRY, AND SUBCELLULAR LOCATION [LARGE SCALE
RP ANALYSIS].
RX PubMed=18431481; DOI=10.1371/journal.pone.0001994;
RA Zybailov B., Rutschow H., Friso G., Rudella A., Emanuelsson O., Sun Q.,
RA van Wijk K.J.;
RT "Sorting signals, N-terminal modifications and abundance of the chloroplast
RT proteome.";
RL PLoS ONE 3:E1994-E1994(2008).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000269|PubMed:11719511, ECO:0000269|PubMed:18431481}; Single-pass
CC membrane protein {ECO:0000269|PubMed:11719511}; Lumenal side
CC {ECO:0000269|PubMed:11719511}.
CC -!- SIMILARITY: Belongs to the UPF0603 family. {ECO:0000305}.
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DR EMBL; AJ560718; CAD90763.1; -; mRNA.
DR EMBL; AC005388; AAC64889.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE33146.1; -; Genomic_DNA.
DR EMBL; AF375432; AAK53016.1; -; mRNA.
DR EMBL; AY062467; AAL32545.1; -; mRNA.
DR EMBL; AY081295; AAL91184.1; -; mRNA.
DR EMBL; AY093282; AAM13281.1; -; mRNA.
DR EMBL; BT000389; AAN15708.1; -; mRNA.
DR EMBL; AY143889; AAN28828.1; -; mRNA.
DR EMBL; AY087803; AAM65339.1; -; mRNA.
DR EMBL; AK226383; BAE98530.1; -; mRNA.
DR PIR; H96589; H96589.
DR RefSeq; NP_564667.1; NM_104353.3.
DR PDB; 3PTJ; X-ray; 2.60 A; A=84-235.
DR PDB; 3PVH; X-ray; 1.60 A; A=84-235.
DR PDB; 3PW9; X-ray; 2.10 A; A=84-235.
DR PDBsum; 3PTJ; -.
DR PDBsum; 3PVH; -.
DR PDBsum; 3PW9; -.
DR AlphaFoldDB; Q9ZVL6; -.
DR SMR; Q9ZVL6; -.
DR BioGRID; 27144; 1.
DR STRING; 3702.AT1G54780.1; -.
DR iPTMnet; Q9ZVL6; -.
DR PaxDb; Q9ZVL6; -.
DR PRIDE; Q9ZVL6; -.
DR ProteomicsDB; 228563; -.
DR EnsemblPlants; AT1G54780.1; AT1G54780.1; AT1G54780.
DR GeneID; 841919; -.
DR Gramene; AT1G54780.1; AT1G54780.1; AT1G54780.
DR KEGG; ath:AT1G54780; -.
DR Araport; AT1G54780; -.
DR TAIR; locus:2199466; AT1G54780.
DR eggNOG; ENOG502QQ6F; Eukaryota.
DR HOGENOM; CLU_065264_0_1_1; -.
DR InParanoid; Q9ZVL6; -.
DR OMA; IPMATYY; -.
DR OrthoDB; 1363895at2759; -.
DR PhylomeDB; Q9ZVL6; -.
DR BRENDA; 3.1.3.2; 399.
DR EvolutionaryTrace; Q9ZVL6; -.
DR PRO; PR:Q9ZVL6; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; Q9ZVL6; baseline and differential.
DR Genevisible; Q9ZVL6; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0009579; C:thylakoid; HDA:TAIR.
DR GO; GO:0031977; C:thylakoid lumen; HDA:TAIR.
DR GO; GO:0003993; F:acid phosphatase activity; IDA:TAIR.
DR GO; GO:0003729; F:mRNA binding; IDA:TAIR.
DR GO; GO:0010206; P:photosystem II repair; IMP:TAIR.
DR InterPro; IPR007621; TPM_dom.
DR Pfam; PF04536; TPM_phosphatase; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Chloroplast; Direct protein sequencing; Membrane; Plastid;
KW Reference proteome; Thylakoid; Transit peptide; Transmembrane;
KW Transmembrane helix.
FT TRANSIT 1..?
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT TRANSIT ?..84
FT /note="Thylakoid"
FT /evidence="ECO:0000269|PubMed:11719511,
FT ECO:0000269|PubMed:11826309"
FT CHAIN 85..285
FT /note="UPF0603 protein At1g54780, chloroplastic"
FT /id="PRO_0000342092"
FT TRANSMEM 259..279
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..48
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 228..251
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 17..48
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 236..251
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT HELIX 84..92
FT /evidence="ECO:0007829|PDB:3PVH"
FT TURN 96..98
FT /evidence="ECO:0007829|PDB:3PVH"
FT STRAND 99..102
FT /evidence="ECO:0007829|PDB:3PVH"
FT HELIX 109..126
FT /evidence="ECO:0007829|PDB:3PVH"
FT STRAND 129..136
FT /evidence="ECO:0007829|PDB:3PVH"
FT STRAND 139..141
FT /evidence="ECO:0007829|PDB:3PVH"
FT HELIX 144..155
FT /evidence="ECO:0007829|PDB:3PVH"
FT HELIX 159..162
FT /evidence="ECO:0007829|PDB:3PVH"
FT STRAND 165..171
FT /evidence="ECO:0007829|PDB:3PVH"
FT TURN 172..175
FT /evidence="ECO:0007829|PDB:3PVH"
FT STRAND 176..181
FT /evidence="ECO:0007829|PDB:3PVH"
FT HELIX 183..189
FT /evidence="ECO:0007829|PDB:3PVH"
FT HELIX 191..199
FT /evidence="ECO:0007829|PDB:3PVH"
FT HELIX 201..207
FT /evidence="ECO:0007829|PDB:3PVH"
FT HELIX 211..226
FT /evidence="ECO:0007829|PDB:3PVH"
SQ SEQUENCE 285 AA; 31139 MW; E12D49A659844300 CRC64;
METLLSPRAL SPPLNPKPLS LHQTKPTSHS LSLSKPTTFS GPKHLSTRFT KPESRNWLID
AKQGLAALAL SLTLTFSPVG TALASEFNIL NDGPPKETYV VDDAGVLSRV TKSDLKKLLS
DLEYRKKLRL NFITVRKLTS KADAFEYADQ VLEKWYPSIE EGNNKGIVVL ITSQKEGAIT
GGPAFIEAVG ENILDATVSE NLPVLATDEK YNEAVYSSAK RLVAAIDGQP DPGGPTVKDS
KRESNFKTKE ETDEKRGQFS LVVGGLLVIA FVVPMAQYFA YVSRK
