U6DT_PETCR
ID U6DT_PETCR Reviewed; 400 AA.
AC W0SKS3;
DT 05-JUL-2017, integrated into UniProtKB/Swiss-Prot.
DT 19-MAR-2014, sequence version 1.
DT 25-MAY-2022, entry version 19.
DE RecName: Full=Umbelliferone 6-dimethylallyltransferase, chloroplastic {ECO:0000303|PubMed:24354545};
DE EC=2.5.1.139 {ECO:0000269|PubMed:24354545};
DE Flags: Precursor;
GN Name=PcPT {ECO:0000303|PubMed:24354545};
OS Petroselinum crispum (Parsley) (Petroselinum hortense).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; campanulids; Apiales; Apiaceae; Apioideae; apioid superclade;
OC Apieae; Petroselinum.
OX NCBI_TaxID=4043 {ECO:0000312|EMBL:BAO31627.1};
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, CATALYTIC ACTIVITY, SUBSTRATE
RP SPECIFICITY, BIOPHYSICOCHEMICAL PROPERTIES, TISSUE SPECIFICITY, INDUCTION
RP BY UV, SUBCELLULAR LOCATION, AND ACTIVITY REGULATION.
RX PubMed=24354545; DOI=10.1111/tpj.12409;
RA Karamat F., Olry A., Munakata R., Koeduka T., Sugiyama A., Paris C.,
RA Hehn A., Bourgaud F., Yazaki K.;
RT "A coumarin-specific prenyltransferase catalyzes the crucial biosynthetic
RT reaction for furanocoumarin formation in parsley.";
RL Plant J. 77:627-638(2014).
CC -!- FUNCTION: Prenylates umbelliferone in the presence of dimethylallyl
CC diphosphate (DMAPP) at the 6 position to yield demethylsuberosin (DMS)
CC as the main product, together with a minor amount of osthenol
CC corresponding to 8-prenylated umbelliferone. No activity with other
CC coumarine derivatives such as psoralen, bergapten and xanthotoxin, or
CC with geranyl diphosphate or farnesyl diphosphate as prenyl donors.
CC {ECO:0000269|PubMed:24354545}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=dimethylallyl diphosphate + umbelliferone = demethylsuberosin
CC + diphosphate; Xref=Rhea:RHEA:51868, ChEBI:CHEBI:27510,
CC ChEBI:CHEBI:33019, ChEBI:CHEBI:57623, ChEBI:CHEBI:69042;
CC EC=2.5.1.139; Evidence={ECO:0000269|PubMed:24354545};
CC -!- ACTIVITY REGULATION: Inhibited by psoralen, a major downstream product.
CC {ECO:0000269|PubMed:24354545}.
CC -!- BIOPHYSICOCHEMICAL PROPERTIES:
CC Kinetic parameters:
CC KM=21 uM for umbelliferone in the reaction producing
CC demethylsuberosin {ECO:0000269|PubMed:24354545};
CC KM=79 uM for dimethylallyl diphosphate in the reaction producing
CC demethylsuberosin {ECO:0000269|PubMed:24354545};
CC KM=25 uM for umbelliferone in the reaction producing osthenol
CC {ECO:0000269|PubMed:24354545};
CC KM=45 uM for dimethylallyl diphosphate in the reaction producing
CC osthenol {ECO:0000269|PubMed:24354545};
CC pH dependence:
CC Optimum pH is 8.2. {ECO:0000269|PubMed:24354545};
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast membrane
CC {ECO:0000269|PubMed:24354545}; Multi-pass membrane protein
CC {ECO:0000255}.
CC -!- TISSUE SPECIFICITY: Expressed in roots, leaves and stems.
CC {ECO:0000269|PubMed:24354545}.
CC -!- INDUCTION: Up-regulated upon UV-B irradiation.
CC {ECO:0000269|PubMed:24354545}.
CC -!- SIMILARITY: Belongs to the UbiA prenyltransferase family.
CC {ECO:0000305}.
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DR EMBL; AB825956; BAO31627.1; -; mRNA.
DR AlphaFoldDB; W0SKS3; -.
DR SMR; W0SKS3; -.
DR KEGG; ag:BAO31627; -.
DR BRENDA; 2.5.1.139; 4694.
DR GO; GO:0009507; C:chloroplast; IDA:UniProtKB.
DR GO; GO:0031969; C:chloroplast membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0004659; F:prenyltransferase activity; IDA:UniProtKB.
DR GO; GO:0071493; P:cellular response to UV-B; IDA:UniProtKB.
DR CDD; cd13960; PT_UbiA_HPT1; 1.
DR Gene3D; 1.10.357.140; -; 1.
DR InterPro; IPR044502; AtHST-like.
DR InterPro; IPR000537; UbiA_prenyltransferase.
DR InterPro; IPR044878; UbiA_sf.
DR Pfam; PF01040; UbiA; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Membrane; Plastid; Transferase; Transit peptide;
KW Transmembrane; Transmembrane helix.
FT TRANSIT 1..48
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 49..400
FT /note="Umbelliferone 6-dimethylallyltransferase,
FT chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000440667"
FT TRANSMEM 116..136
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 143..163
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 204..224
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 242..262
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 278..298
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 321..341
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 345..365
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 379..399
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 400 AA; 44221 MW; 39EF2CFFD531FFB2 CRC64;
MSQTLMHSRF SSGFLHHQPE KGFLTLQTQR RHAKTLKGEK EFPSRVVSCH KNVDSSKNFS
SSCEKSKTQE KILAQTLGAT SDGEAIVQPN NDFEVTWQNT LRRKWDAFSI FSRPYSAICT
IIGISSVSLL PLTSVADFSP AYFVGLLQAL IPFLCANIYT SAINQLVDVD IDKINKPYLP
LVSGEFSMGE GRAIVSALTF TCFAMAIMSH SVPLFVGVLV YFLIGTAYSV EHPLLRWKTK
PAMAAFSMAG LMGLTIQPTV FYHIQNVLGK PMVFSRSVAF ATMFFSIFAA CLGAIKDIPD
VEGDREFGNL TFSVRYGQEK VFSFCLNVLL LAYGSAVVVG ASSSSLLCKT VSVIGHTVLA
SLLVLRAKST NPKDPESTQS FYMFLFKLLY AEYVLIHFMR