UDT1_ORYSJ
ID UDT1_ORYSJ Reviewed; 234 AA.
AC B9FXT3; C7J4L7; Q58GE3; Q84ZC1;
DT 08-JUN-2016, integrated into UniProtKB/Swiss-Prot.
DT 08-JUN-2016, sequence version 2.
DT 03-AUG-2022, entry version 74.
DE RecName: Full=Transcription factor UDT1 {ECO:0000305};
DE AltName: Full=Basic helix-loop-helix protein 164 {ECO:0000305};
DE Short=OsbHLH164 {ECO:0000303|PubMed:16896230};
DE AltName: Full=Protein UNDEVELOPED TAPETUM 1 {ECO:0000303|PubMed:16141453};
GN Name=UDT1 {ECO:0000303|PubMed:16141453}; Synonyms=BHLH164 {ECO:0000305};
GN OrderedLocusNames=Os07g0549600 {ECO:0000312|EMBL:BAT02035.1},
GN LOC_Os07g36460 {ECO:0000305};
GN ORFNames=OsJ_24663 {ECO:0000312|EMBL:EEE67370.1},
GN P0534A03.125 {ECO:0000312|EMBL:BAC57731.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, SUBCELLULAR LOCATION,
RP DEVELOPMENTAL STAGE, AND DISRUPTION PHENOTYPE.
RC STRAIN=cv. Dongjin; TISSUE=Anther;
RX PubMed=16141453; DOI=10.1105/tpc.105.034090;
RA Jung K.H., Han M.J., Lee Y.S., Kim Y.W., Hwang I., Kim M.J., Kim Y.K.,
RA Nahm B.H., An G.;
RT "Rice undeveloped tapetum1 is a major regulator of early tapetum
RT development.";
RL Plant Cell 17:2705-2722(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 28-234.
RC STRAIN=cv. Nipponbare;
RG The rice full-length cDNA consortium;
RT "Oryza sativa full length cDNA.";
RL Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases.
RN [7]
RP GENE FAMILY, AND NOMENCLATURE.
RX PubMed=16896230; DOI=10.1104/pp.106.080580;
RA Li X., Duan X., Jiang H., Sun Y., Tang Y., Yuan Z., Guo J., Liang W.,
RA Chen L., Yin J., Ma H., Wang J., Zhang D.;
RT "Genome-wide analysis of basic/helix-loop-helix transcription factor family
RT in rice and Arabidopsis.";
RL Plant Physiol. 141:1167-1184(2006).
RN [8]
RP FUNCTION.
RX PubMed=20590996; DOI=10.1111/j.1744-7909.2010.00959.x;
RA Liu Z., Bao W., Liang W., Yin J., Zhang D.;
RT "Identification of gamyb-4 and analysis of the regulatory role of GAMYB in
RT rice anther development.";
RL J. Integr. Plant Biol. 52:670-678(2010).
CC -!- FUNCTION: Transcription factor that plays a crucial role in tapetum
CC development. Required for male fertility and pollen differentiation
CC within the developing anther. Plays a major role in maintaining tapetum
CC development, starting in early meiosis. Required for pollen mother cell
CC meiosis. May regulate the anther-specific cysteine protease CP1 and
CC lipid-transfer proteins C4 and C6 (PubMed:16141453). Required for
CC anther development. Functions in parallel with GAMYB to regulate early
CC anther development. Functions upstream of the transcription factor TDR
CC and may positively regulate its transcription (PubMed:20590996).
CC {ECO:0000269|PubMed:16141453, ECO:0000269|PubMed:20590996}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00981,
CC ECO:0000269|PubMed:16141453}.
CC -!- DEVELOPMENTAL STAGE: During anther development, expressed at the late
CC premeiosis and meiosis stages in both the anther wall and the
CC microspores. After meiosis, expressed in the tapetum, connective
CC tissue, and vascular bundles. {ECO:0000269|PubMed:16141453}.
CC -!- DISRUPTION PHENOTYPE: Male sterility due to failure of tapetum to
CC differentiate and pollen to mature. {ECO:0000269|PubMed:16141453}.
CC -!- SIMILARITY: Belongs to the bHLH protein family.
CC -!- CAUTION: Contains a degenerate basic motif not likely to bind DNA.
CC {ECO:0000255|PROSITE-ProRule:PRU00981}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAC57731.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAH93976.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AY953870; AAX55226.1; -; Genomic_DNA.
DR EMBL; AP004401; BAC57731.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008213; BAH93976.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014963; BAT02035.1; -; Genomic_DNA.
DR EMBL; CM000144; EEE67370.1; -; Genomic_DNA.
DR EMBL; AK242516; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015645913.1; XM_015790427.1.
DR AlphaFoldDB; B9FXT3; -.
DR SMR; B9FXT3; -.
DR STRING; 4530.OS07T0549600-01; -.
DR PaxDb; B9FXT3; -.
DR PRIDE; B9FXT3; -.
DR GeneID; 9269572; -.
DR KEGG; osa:9269572; -.
DR eggNOG; ENOG502SPJG; Eukaryota.
DR HOGENOM; CLU_108216_0_0_1; -.
DR OrthoDB; 1323520at2759; -.
DR Proteomes; UP000000763; Chromosome 7.
DR Proteomes; UP000007752; Chromosome 7.
DR Proteomes; UP000059680; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IDA:UniProtKB.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0048658; P:anther wall tapetum development; IMP:UniProtKB.
DR GO; GO:0009555; P:pollen development; IMP:UniProtKB.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR Gene3D; 4.10.280.10; -; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; SSF47459; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 2: Evidence at transcript level;
KW Developmental protein; Nucleus; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..234
FT /note="Transcription factor UDT1"
FT /id="PRO_0000436455"
FT DOMAIN 61..110
FT /note="bHLH"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 1..51
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 61..74
FT /note="Basic motif; degenerate"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT REGION 75..110
FT /note="Helix-loop-helix motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981"
FT CONFLICT 10
FT /note="G -> S (in Ref. 1; AAX55226)"
FT /evidence="ECO:0000305"
FT CONFLICT 25
FT /note="I -> V (in Ref. 1; AAX55226)"
FT /evidence="ECO:0000305"
FT CONFLICT 133
FT /note="C -> G (in Ref. 1; AAX55226)"
FT /evidence="ECO:0000305"
FT CONFLICT 161
FT /note="C -> S (in Ref. 1; AAX55226)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 234 AA; 25675 MW; 148E45D082D1C233 CRC64;
MPRRARARGG GGGGGEEVKV EDDFIDSVLN FGGGGGGEED GDDGEEEQQQ QQAAAAAMGK
EFKSKNLEAE RRRRGRLNGN IFALRAVVPK ITKMSKEATL SDAIEHIKNL QNEVLELQRQ
LGDSPGEAWE KQCSASCSES FVPTENAHYQ GQVELISLGS CKYNLKIFWT KRAGLFTKVL
EALCSYKVQV LSLNTISFYG YAESFFTIEV KGEQDVVMVE LRSLLSSIVE VPSI
