UTP11_ORYSJ
ID UTP11_ORYSJ Reviewed; 229 AA.
AC Q8S1Z1; Q0JID4; Q5VQN9;
DT 04-APR-2003, integrated into UniProtKB/Swiss-Prot.
DT 16-AUG-2005, sequence version 2.
DT 03-AUG-2022, entry version 100.
DE RecName: Full=Probable U3 small nucleolar RNA-associated protein 11;
DE Short=U3 snoRNA-associated protein 11;
GN OrderedLocusNames=Os01g0810000, LOC_Os01g59500;
GN ORFNames=OsJ_03819 {ECO:0000312|EMBL:EEE55555.1}, P0468B07.32-1,
GN P0468B07.32-2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: Involved in nucleolar processing of pre-18S ribosomal RNA.
CC {ECO:0000250}.
CC -!- SUBUNIT: Component of the ribosomal small subunit (SSU) processome.
CC {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000250}.
CC -!- SIMILARITY: Belongs to the UTP11 family. {ECO:0000305}.
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DR EMBL; AP003260; BAD68234.1; -; Genomic_DNA.
DR EMBL; AP003260; BAD68235.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06494.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS74863.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS74864.1; -; Genomic_DNA.
DR EMBL; CM000138; EEE55555.1; -; Genomic_DNA.
DR EMBL; AK102143; BAG95410.1; -; mRNA.
DR EMBL; AK120752; BAH00155.1; -; mRNA.
DR RefSeq; XP_015648861.1; XM_015793375.1.
DR RefSeq; XP_015648867.1; XM_015793381.1.
DR AlphaFoldDB; Q8S1Z1; -.
DR SMR; Q8S1Z1; -.
DR STRING; 4530.OS01T0810000-02; -.
DR PaxDb; Q8S1Z1; -.
DR PRIDE; Q8S1Z1; -.
DR EnsemblPlants; Os01t0810000-01; Os01t0810000-01; Os01g0810000.
DR EnsemblPlants; Os01t0810000-02; Os01t0810000-02; Os01g0810000.
DR GeneID; 4327566; -.
DR Gramene; Os01t0810000-01; Os01t0810000-01; Os01g0810000.
DR Gramene; Os01t0810000-02; Os01t0810000-02; Os01g0810000.
DR KEGG; osa:4327566; -.
DR eggNOG; KOG3237; Eukaryota.
DR HOGENOM; CLU_061887_1_0_1; -.
DR InParanoid; Q8S1Z1; -.
DR OMA; YVVMKRT; -.
DR OrthoDB; 1346432at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000007752; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q8S1Z1; OS.
DR GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR GO; GO:0032040; C:small-subunit processome; IBA:GO_Central.
DR GO; GO:0009561; P:megagametogenesis; IEA:EnsemblPlants.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR InterPro; IPR007144; SSU_processome_Utp11.
DR PANTHER; PTHR12838; PTHR12838; 1.
DR Pfam; PF03998; Utp11; 1.
DR PIRSF; PIRSF015952; U3snoRNP11; 1.
PE 2: Evidence at transcript level;
KW Nucleus; Reference proteome; rRNA processing.
FT CHAIN 1..229
FT /note="Probable U3 small nucleolar RNA-associated protein
FT 11"
FT /id="PRO_0000211050"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 199..229
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 8..23
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 199..217
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 229 AA; 27512 MW; B50320C7E998252C CRC64;
MSSLRNAIQR RAHKERAQPE SRKKFGLLEK HKDYIVRAKA FHQKEETIRK LKEKASFRNP
DEFYFKMINS KTVDGIHRPK PEANKYTEDE LMLLKTKDMG YILQGIQSEK KKIEKLSSML
HELDNKRPNK HVYFAEDREE VKEIQSRIEQ KSSSLGLDNI PSRIKRKTAS SYRELEERKQ
RVQKLEKLYA DMALQKELKK PGRKRKLRED EIENQTSRPV YKWRAQRKR
