UVB31_ARATH
ID UVB31_ARATH Reviewed; 421 AA.
AC Q9LVJ0; F4J6F0; Q0WNF6; Q56ZA5; Q8W4L9;
DT 14-OCT-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-2000, sequence version 1.
DT 03-AUG-2022, entry version 122.
DE RecName: Full=UV-B-induced protein At3g17800, chloroplastic {ECO:0000305};
DE Flags: Precursor;
GN OrderedLocusNames=At3g17800 {ECO:0000312|EMBL:AAM20406.1};
GN ORFNames=MEB5.2 {ECO:0000312|EMBL:BAB02703.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=10819329; DOI=10.1093/dnares/7.2.131;
RA Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
RT features of the regions of 4,504,864 bp covered by sixty P1 and TAC
RT clones.";
RL DNA Res. 7:131-135(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC STRAIN=cv. Columbia;
RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA Shinozaki K.;
RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP INDUCTION BY OZONE; UV-B AND WOUNDING.
RC STRAIN=cv. Columbia;
RX PubMed=12665302; DOI=10.1039/b202659g;
RA Brosche M., Schuler M.A., Kalbina I., Connor L., Strid A.;
RT "Gene regulation by low level UV-B radiation: identification by DNA array
RT analysis.";
RL Photochem. Photobiol. Sci. 1:656-664(2002).
RN [6]
RP INDUCTION BY UV-B.
RC STRAIN=cv. Columbia;
RX PubMed=15474373; DOI=10.1016/j.plaphy.2004.06.011;
RA Saevenstrand H., Brosche M., Strid A.;
RT "Ultraviolet-B signalling: Arabidopsis brassinosteroid mutants are
RT defective in UV-B regulated defence gene expression.";
RL Plant Physiol. Biochem. 42:687-694(2004).
RN [7]
RP INDUCTION BY UV-B.
RC STRAIN=cv. Columbia;
RX PubMed=16913867; DOI=10.1111/j.1365-3040.2006.01555.x;
RA Kalbina I., Strid A.;
RT "The role of NADPH oxidase and MAP kinase phosphatase in UV-B-dependent
RT gene expression in Arabidopsis.";
RL Plant Cell Environ. 29:1783-1793(2006).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000255}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q9LVJ0-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q9LVJ0-2; Sequence=VSP_057944;
CC -!- INDUCTION: Induced transiently by UV-B, ozone and wounding.
CC {ECO:0000269|PubMed:12665302, ECO:0000269|PubMed:15474373,
CC ECO:0000269|PubMed:16913867}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD94862.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AB019230; BAB02703.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76008.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE76009.1; -; Genomic_DNA.
DR EMBL; AY062486; AAL32564.1; -; mRNA.
DR EMBL; AY093276; AAM13275.1; -; mRNA.
DR EMBL; AY099554; AAM20406.1; -; mRNA.
DR EMBL; AK221063; BAD94862.1; ALT_INIT; mRNA.
DR EMBL; AK229485; BAF01343.1; -; mRNA.
DR RefSeq; NP_001078173.1; NM_001084704.1. [Q9LVJ0-2]
DR RefSeq; NP_566588.1; NM_112661.3. [Q9LVJ0-1]
DR AlphaFoldDB; Q9LVJ0; -.
DR SMR; Q9LVJ0; -.
DR STRING; 3702.AT3G17800.2; -.
DR PaxDb; Q9LVJ0; -.
DR PRIDE; Q9LVJ0; -.
DR ProteomicsDB; 228565; -. [Q9LVJ0-1]
DR EnsemblPlants; AT3G17800.1; AT3G17800.1; AT3G17800. [Q9LVJ0-1]
DR EnsemblPlants; AT3G17800.2; AT3G17800.2; AT3G17800. [Q9LVJ0-2]
DR GeneID; 821048; -.
DR Gramene; AT3G17800.1; AT3G17800.1; AT3G17800. [Q9LVJ0-1]
DR Gramene; AT3G17800.2; AT3G17800.2; AT3G17800. [Q9LVJ0-2]
DR KEGG; ath:AT3G17800; -.
DR Araport; AT3G17800; -.
DR TAIR; locus:2088490; AT3G17800.
DR eggNOG; ENOG502QQTM; Eukaryota.
DR HOGENOM; CLU_041607_0_0_1; -.
DR OMA; FVDTRYH; -.
DR OrthoDB; 707832at2759; -.
DR PhylomeDB; Q9LVJ0; -.
DR PRO; PR:Q9LVJ0; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9LVJ0; baseline and differential.
DR Genevisible; Q9LVJ0; AT.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0010193; P:response to ozone; IEP:UniProtKB.
DR GO; GO:0010224; P:response to UV-B; IGI:TAIR.
DR GO; GO:0009611; P:response to wounding; IEP:UniProtKB.
DR InterPro; IPR038925; At3g17800-like.
DR InterPro; IPR008479; DUF760.
DR PANTHER; PTHR31808; PTHR31808; 1.
DR Pfam; PF05542; DUF760; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Chloroplast; Plastid; Reference proteome;
KW Transit peptide.
FT TRANSIT 1..75
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 76..421
FT /note="UV-B-induced protein At3g17800, chloroplastic"
FT /id="PRO_0000434535"
FT REGION 1..40
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 74..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 48
FT /note="R -> RVCPKSL (in isoform 2)"
FT /id="VSP_057944"
FT CONFLICT 48
FT /note="R -> K (in Ref. 3; AAL32564/AAM13275)"
FT /evidence="ECO:0000305"
FT CONFLICT 63
FT /note="T -> A (in Ref. 4; BAF01343)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 421 AA; 46067 MW; 35A752E6D88715C7 CRC64;
MDALTSSLVR SPIVPSRTSD NGSGSMFLTA SGPGFTRSGS SRLQLRLRQN ASARSSRSLQ
SLTTTAKTRR SFVVRASSAS NDASSGSSPK PIAPLQLQSP AGQFLSQILV SHPHLVPAAV
EQQLEQLQTD RDSQGQNKDS ASVPGTDIVL YRRIAELKEN ERRRTLEEIL YALVVQKFME
ANVSLVPSVS PSSDPSGRVD TWPTKVEKLE RLHSPEMYEM IHNHLALILG SRMGDLNSVA
QISKLRVGQV YAASVMYGYF LKRVDQRFQL EKTMKILPGG SDESKTSVEQ AEGTATYQAA
VSSHPEVGAF AGGVSAKGFG SEIKPSRLRS YVMSFDAETL QRYATIRSRE AVGIIEKHTE
ALFGKPEIVI TPEGTVDSSK DEQIKISFGG MKRLVLEAVT FGSFLWDVES HVDARYHFVL
N
