ID   CAF1M_ORYSJ             Reviewed;         428 AA.
AC   Q6Z4U2; A0A0P0XCU5;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   05-JUL-2004, sequence version 1.
DT   03-AUG-2022, entry version 94.
DE   RecName: Full=CRS2-associated factor 1, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=Os08g0174900, LOC_Os08g07790;
GN   ORFNames=OJ1134_B10.1, OSJNBa0054L03.32;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
CC   -!- FUNCTION: May be involved in the splicing of group IIB introns in
CC       mitochondria. {ECO:0000250}.
CC   -!- SUBUNIT: Part of large ribonucleo-protein complexes that include group
CC       IIB introns. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
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DR   EMBL; AP003882; BAD05220.1; -; Genomic_DNA.
DR   EMBL; AP005164; BAD05547.1; -; Genomic_DNA.
DR   EMBL; AP008214; BAF23024.1; -; Genomic_DNA.
DR   EMBL; AP014964; BAT04054.1; -; Genomic_DNA.
DR   RefSeq; XP_015648634.1; XM_015793148.1.
DR   AlphaFoldDB; Q6Z4U2; -.
DR   SMR; Q6Z4U2; -.
DR   STRING; 4530.OS08T0174900-01; -.
DR   PaxDb; Q6Z4U2; -.
DR   PRIDE; Q6Z4U2; -.
DR   EnsemblPlants; Os08t0174900-01; Os08t0174900-01; Os08g0174900.
DR   GeneID; 4344787; -.
DR   Gramene; Os08t0174900-01; Os08t0174900-01; Os08g0174900.
DR   KEGG; osa:4344787; -.
DR   eggNOG; ENOG502QQI8; Eukaryota.
DR   HOGENOM; CLU_053415_1_0_1; -.
DR   InParanoid; Q6Z4U2; -.
DR   OMA; HNHWKHA; -.
DR   OrthoDB; 983035at2759; -.
DR   Proteomes; UP000000763; Chromosome 8.
DR   Proteomes; UP000059680; Chromosome 8.
DR   Genevisible; Q6Z4U2; OS.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0000373; P:Group II intron splicing; IEA:InterPro.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   Gene3D; 3.30.110.60; -; 2.
DR   InterPro; IPR044599; CAF1P_plant.
DR   InterPro; IPR001890; RNA-binding_CRM.
DR   InterPro; IPR035920; YhbY-like_sf.
DR   PANTHER; PTHR46247; PTHR46247; 1.
DR   Pfam; PF01985; CRS1_YhbY; 2.
DR   SMART; SM01103; CRS1_YhbY; 2.
DR   SUPFAM; SSF75471; SSF75471; 2.
DR   PROSITE; PS51295; CRM; 2.
PE   3: Inferred from homology;
KW   Mitochondrion; mRNA processing; mRNA splicing; Reference proteome; Repeat;
KW   Ribonucleoprotein; RNA-binding; Transit peptide.
FT   TRANSIT         1..21
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           22..428
FT                   /note="CRS2-associated factor 1, mitochondrial"
FT                   /id="PRO_0000283618"
FT   DOMAIN          155..253
FT                   /note="CRM 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00626"
FT   DOMAIN          275..371
FT                   /note="CRM 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00626"
FT   REGION          33..100
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          129..152
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          378..428
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        390..416
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   428 AA;  47988 MW;  291F4733AE6448C8 CRC64;
     MLLLAGLLRR ARPPRRPSVR RLSGLLDRYG FVPPASLTPH SASDDGGAKK RRPKKPPYRP
     PSSLDRGGRP AARSDLPFDF RFSYTESSPG DKPIGLREPK YSPFGPGRLD RPWTGLCAPA
     VDTTLRDAHA DDPAPAAERE LEEARRRERE RVLGEPLTPA ERAFLVSKCQ KSRTKKQINL
     GRDGLTHNML NDIHNHWKND EAVRVKCLGV PTVDMQNVCH QLEDKTGGLI IHRHGGQLIL
     YRGRHYNPKK RPVIPLMLWK PAEPVYPRLI KTTIEGLTVE ETKEMRKKGL YVPVLTKLAK
     NGYYASLVPM VRDAFLTDEL VRIDSKGLPK SDYRKIGVKL RDLVPCIIVS FDKEQIIVWR
     GKDYNGTIQD NTQKTSVSVL EEESAGAESE NGDQEQASSD WASDECSQLS SSDEMPDDKS
     AISEADSD