CAF2M_ARATH
ID CAF2M_ARATH Reviewed; 358 AA.
AC Q9FFU1;
DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 25-MAY-2022, entry version 94.
DE RecName: Full=CRS2-associated factor 2, mitochondrial;
DE Flags: Precursor;
GN OrderedLocusNames=At5g54890; ORFNames=MBG8.16;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=9330910; DOI=10.1093/dnares/4.3.215;
RA Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M.,
RA Miyajima N., Tabata S.;
RT "Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
RT features of the 1.6 Mb regions covered by twenty physically assigned P1
RT clones.";
RL DNA Res. 4:215-230(1997).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-126.
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
CC -!- FUNCTION: May be involved in the splicing of group IIB introns in
CC mitochondria. {ECO:0000250}.
CC -!- SUBUNIT: Part of large ribonucleo-protein complexes that include group
CC IIB introns. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
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DR EMBL; AB005232; BAB08768.1; -; Genomic_DNA.
DR EMBL; CP002688; AED96553.1; -; Genomic_DNA.
DR EMBL; BP797158; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; NP_200300.1; NM_124871.3.
DR AlphaFoldDB; Q9FFU1; -.
DR SMR; Q9FFU1; -.
DR STRING; 3702.AT5G54890.1; -.
DR PaxDb; Q9FFU1; -.
DR PRIDE; Q9FFU1; -.
DR ProteomicsDB; 240392; -.
DR EnsemblPlants; AT5G54890.1; AT5G54890.1; AT5G54890.
DR GeneID; 835580; -.
DR Gramene; AT5G54890.1; AT5G54890.1; AT5G54890.
DR KEGG; ath:AT5G54890; -.
DR Araport; AT5G54890; -.
DR TAIR; locus:2160195; AT5G54890.
DR eggNOG; ENOG502QT4I; Eukaryota.
DR HOGENOM; CLU_053415_1_0_1; -.
DR InParanoid; Q9FFU1; -.
DR OMA; ILWRGKV; -.
DR OrthoDB; 983035at2759; -.
DR PhylomeDB; Q9FFU1; -.
DR PRO; PR:Q9FFU1; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9FFU1; baseline and differential.
DR Genevisible; Q9FFU1; AT.
DR GO; GO:0005739; C:mitochondrion; IDA:TAIR.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0000373; P:Group II intron splicing; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR Gene3D; 3.30.110.60; -; 2.
DR InterPro; IPR044599; CAF1P_plant.
DR InterPro; IPR001890; RNA-binding_CRM.
DR InterPro; IPR035920; YhbY-like_sf.
DR PANTHER; PTHR46247; PTHR46247; 1.
DR Pfam; PF01985; CRS1_YhbY; 2.
DR SMART; SM01103; CRS1_YhbY; 2.
DR SUPFAM; SSF75471; SSF75471; 2.
DR PROSITE; PS51295; CRM; 2.
PE 2: Evidence at transcript level;
KW Mitochondrion; mRNA processing; mRNA splicing; Reference proteome; Repeat;
KW Ribonucleoprotein; RNA-binding; Transit peptide.
FT TRANSIT 1..28
FT /note="Mitochondrion"
FT /evidence="ECO:0000255"
FT CHAIN 29..358
FT /note="CRS2-associated factor 2, mitochondrial"
FT /id="PRO_0000283622"
FT DOMAIN 141..239
FT /note="CRM 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00626"
FT DOMAIN 261..357
FT /note="CRM 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00626"
FT REGION 35..64
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 358 AA; 41411 MW; A3A9BFF310EBEAE0 CRC64;
MLSIRRSLTL AKEPKDLFLF LCNLRARCVS TDDYDPPFSP LSKPTKPPKE KKKQKTKKQD
QSSELVNDLK IPVISDLPFD FRYSYSETNP EIEPIGFREP KRFSPFGPGR LDRKWTGTTA
LASPEIDQSQ WVEERARVLG ETLTEDEVTE LIERYRHSDC TRQINLGKGG VTHNMIDDIH
NHWKKAEAVR IKCLGVPTLD MDNICFHLEE KSGGKIVYRN INILVLYRGR NYDPKSRPII
PLMLWKPHPP IYPRLVKNVA DGLEFEETKE MRNRGLHSPA LMKLTRNGVY VNVVGRVREE
FETEEIVRLD CTHVGMSDCK RIGVKLKEMV PCVPILFKDE QIILWRGKRT GEEELVTL
