ID   CAF2M_ORYSJ             Reviewed;         366 AA.
AC   Q0J7J7;
DT   03-APR-2007, integrated into UniProtKB/Swiss-Prot.
DT   03-APR-2007, sequence version 2.
DT   03-AUG-2022, entry version 82.
DE   RecName: Full=CRS2-associated factor 2, mitochondrial;
DE   Flags: Precursor;
GN   OrderedLocusNames=Os08g0188000, LOC_Os08g08860; ORFNames=P0020B10.28;
OS   Oryza sativa subsp. japonica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39947;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Nipponbare;
RX   PubMed=16100779; DOI=10.1038/nature03895;
RG   International rice genome sequencing project (IRGSP);
RT   "The map-based sequence of the rice genome.";
RL   Nature 436:793-800(2005).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=18089549; DOI=10.1093/nar/gkm978;
RG   The rice annotation project (RAP);
RT   "The rice annotation project database (RAP-DB): 2008 update.";
RL   Nucleic Acids Res. 36:D1028-D1033(2008).
RN   [3]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA   Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA   Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA   Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA   Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT   "Improvement of the Oryza sativa Nipponbare reference genome using next
RT   generation sequence and optical map data.";
RL   Rice 6:4-4(2013).
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 24-366.
RC   STRAIN=cv. Nipponbare;
RX   PubMed=12869764; DOI=10.1126/science.1081288;
RG   The rice full-length cDNA consortium;
RT   "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT   japonica rice.";
RL   Science 301:376-379(2003).
CC   -!- FUNCTION: May be involved in the splicing of group IIB introns in
CC       mitochondria. {ECO:0000250}.
CC   -!- SUBUNIT: Part of large ribonucleo-protein complexes that include group
CC       IIB introns. {ECO:0000250}.
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAF23068.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR   EMBL; AP004656; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AP008214; BAF23068.1; ALT_INIT; Genomic_DNA.
DR   EMBL; AP014964; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AK107337; -; NOT_ANNOTATED_CDS; mRNA.
DR   RefSeq; XP_015648481.1; XM_015792995.1.
DR   AlphaFoldDB; Q0J7J7; -.
DR   SMR; Q0J7J7; -.
DR   STRING; 4530.OS08T0188000-01; -.
DR   PaxDb; Q0J7J7; -.
DR   PRIDE; Q0J7J7; -.
DR   GeneID; 4344836; -.
DR   KEGG; osa:4344836; -.
DR   eggNOG; ENOG502QT4I; Eukaryota.
DR   HOGENOM; CLU_053415_1_0_1; -.
DR   InParanoid; Q0J7J7; -.
DR   OrthoDB; 983035at2759; -.
DR   Proteomes; UP000000763; Chromosome 8.
DR   Proteomes; UP000059680; Chromosome 8.
DR   Genevisible; Q0J7J7; OS.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0000373; P:Group II intron splicing; IEA:InterPro.
DR   GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR   Gene3D; 3.30.110.60; -; 2.
DR   InterPro; IPR044599; CAF1P_plant.
DR   InterPro; IPR001890; RNA-binding_CRM.
DR   InterPro; IPR035920; YhbY-like_sf.
DR   PANTHER; PTHR46247; PTHR46247; 1.
DR   Pfam; PF01985; CRS1_YhbY; 2.
DR   SMART; SM01103; CRS1_YhbY; 2.
DR   SUPFAM; SSF75471; SSF75471; 2.
DR   PROSITE; PS51295; CRM; 2.
PE   2: Evidence at transcript level;
KW   Mitochondrion; mRNA processing; mRNA splicing; Reference proteome; Repeat;
KW   Ribonucleoprotein; RNA-binding; Transit peptide.
FT   TRANSIT         1..14
FT                   /note="Mitochondrion"
FT                   /evidence="ECO:0000255"
FT   CHAIN           15..366
FT                   /note="CRS2-associated factor 2, mitochondrial"
FT                   /id="PRO_0000283623"
FT   DOMAIN          143..241
FT                   /note="CRM 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00626"
FT   DOMAIN          263..359
FT                   /note="CRM 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00626"
FT   REGION          24..82
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        24..69
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   CONFLICT        186
FT                   /note="K -> R (in Ref. 4; AK107337)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   366 AA;  41416 MW;  FB65F521316633E9 CRC64;
     MLLPRDLLLL PWRRATAAGE AIARRLNHHR APPFSDPDDD PPFTRLAERP PRAPSKKKKK
     EEEDQGGRIR PPEPASSDLP FDFRYSYSET DPAWRPIGFR EPTRFSPFGP GRLDRPWDGV
     AAAAARGEGA GAAATSREEV LGEPLAEEEV AQLVERYRHS DCSRQINLGK GGVTHNMIDD
     IHNHWKRAEA VRIKCLGVPT LDMDNICFHL EDKTGGKVIY RNINILILYR GRNYDPKQRP
     QIPLMLWKPL APIYPRLVQN VADGLTFEKT KELRNTGLNS SPLMKLTRNG VYVNVVDRVR
     EAFKTVEVVR LDCSHVGSSD CKKIGVKLRD LVPCVPLLFK DEQIILWRGK VKQENSVSLQ
     FSPEPS