VIME_CHICK
ID VIME_CHICK Reviewed; 460 AA.
AC P09654; Q91023;
DT 01-JUL-1989, integrated into UniProtKB/Swiss-Prot.
DT 23-JAN-2007, sequence version 2.
DT 03-AUG-2022, entry version 121.
DE RecName: Full=Vimentin;
GN Name=VIM;
OS Gallus gallus (Chicken).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae;
OC Phasianinae; Gallus.
OX NCBI_TaxID=9031;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=3036797; DOI=10.1016/s0021-9258(18)47536-9;
RA Zehner Z.E., Li Y., Roe B.A., Paterson B.M., Sax C.M.;
RT "The chicken vimentin gene. Nucleotide sequence, regulatory elements, and
RT comparison to the hamster gene.";
RL J. Biol. Chem. 262:8112-8120(1987).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 454-460.
RX PubMed=6573660; DOI=10.1073/pnas.80.4.911;
RA Zehner Z.E., Paterson B.M.;
RT "Characterization of the chicken vimentin gene: single copy gene producing
RT multiple mRNAs.";
RL Proc. Natl. Acad. Sci. U.S.A. 80:911-915(1983).
CC -!- FUNCTION: Vimentins are class-III intermediate filaments found in
CC various non-epithelial cells, especially mesenchymal cells. Vimentin is
CC attached to the nucleus, endoplasmic reticulum, and mitochondria,
CC either laterally or terminally.
CC -!- SUBUNIT: Homomer assembled from elementary dimers. Component of a
CC complex composed at least of ACTB, AP2M1, AP2A1, AP2A2, MEGF10 and VIM
CC (By similarity). {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250|UniProtKB:P08670}.
CC Cytoplasm, cytoskeleton {ECO:0000250|UniProtKB:P08670}. Nucleus matrix
CC {ECO:0000250|UniProtKB:P31000}. Cell membrane
CC {ECO:0000250|UniProtKB:P20152}.
CC -!- DOMAIN: The central alpha-helical coiled-coil IF rod domain mediates
CC elementary homodimerization. {ECO:0000250}.
CC -!- PTM: One of the most prominent phosphoproteins in various cells of
CC mesenchymal origin. Phosphorylation is enhanced during cell division,
CC at which time vimentin filaments are significantly reorganized.
CC {ECO:0000250|UniProtKB:P08670}.
CC -!- SIMILARITY: Belongs to the intermediate filament family.
CC {ECO:0000255|PROSITE-ProRule:PRU01188}.
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DR EMBL; M15852; AAA49134.1; -; Genomic_DNA.
DR EMBL; M15850; AAA49134.1; JOINED; Genomic_DNA.
DR EMBL; M15851; AAA49134.1; JOINED; Genomic_DNA.
DR EMBL; V00447; CAA23726.2; -; Genomic_DNA.
DR PIR; A29329; A29329.
DR AlphaFoldDB; P09654; -.
DR SMR; P09654; -.
DR BioGRID; 681466; 1.
DR IntAct; P09654; 1.
DR STRING; 9031.ENSGALP00000014107; -.
DR PaxDb; P09654; -.
DR PRIDE; P09654; -.
DR VEuPathDB; HostDB:geneid_420519; -.
DR eggNOG; KOG0977; Eukaryota.
DR InParanoid; P09654; -.
DR PhylomeDB; P09654; -.
DR Proteomes; UP000000539; Unplaced.
DR GO; GO:0042995; C:cell projection; IDA:AgBase.
DR GO; GO:0005737; C:cytoplasm; ISS:UniProtKB.
DR GO; GO:0005882; C:intermediate filament; ISS:UniProtKB.
DR GO; GO:0016363; C:nuclear matrix; IEA:UniProtKB-SubCell.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR InterPro; IPR018039; IF_conserved.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR006821; Intermed_filament_DNA-bd.
DR InterPro; IPR027699; Vimentin.
DR PANTHER; PTHR45652:SF5; PTHR45652:SF5; 1.
DR Pfam; PF00038; Filament; 1.
DR Pfam; PF04732; Filament_head; 1.
DR SMART; SM01391; Filament; 1.
DR PROSITE; PS00226; IF_ROD_1; 1.
DR PROSITE; PS51842; IF_ROD_2; 1.
PE 3: Inferred from homology;
KW Cell membrane; Coiled coil; Cytoplasm; Cytoskeleton; Intermediate filament;
KW Membrane; Nucleus; Phosphoprotein; Reference proteome.
FT INIT_MET 1
FT /note="Removed"
FT CHAIN 2..460
FT /note="Vimentin"
FT /id="PRO_0000063761"
FT DOMAIN 97..405
FT /note="IF rod"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU01188"
FT REGION 1..27
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2..89
FT /note="Head"
FT REGION 90..125
FT /note="Coil 1A"
FT REGION 126..147
FT /note="Linker 1"
FT REGION 148..239
FT /note="Coil 1B"
FT REGION 240..262
FT /note="Linker 12"
FT REGION 263..401
FT /note="Coil 2"
FT REGION 402..460
FT /note="Tail"
FT COILED 90..125
FT COILED 148..239
FT COILED 297..401
FT SITE 345
FT /note="Stutter"
FT /evidence="ECO:0000250"
SQ SEQUENCE 460 AA; 53142 MW; C3B509E21ABA6DF3 CRC64;
MSFTSSKNSS YRRMFGGGSR PSSGTRYITS STRYSLGSAL RPSSARYVSA SPGGVYRTKA
TSVRLRSSMP PMRMHDAVDF TLADAINTEF KANRTNEKVE LQELNDRFAN YIDKVRFLEQ
QNKILLAELE QLKGKGTSRL GDLYEEEMRD VRRQVDQLTN DKARVEVERD NLADDIMRLR
EKLQEEMLQR EEAESTLQSF RQDVDNASLA GLDLERPVES LQEEIVFLKK LHDEEIRELQ
AQLQEQHIQI DMDVSKPDLT AALRDVRQQY ESVAAKNLQE AEEWYKSKFA DLSEAANRNN
DALRQAKQEA NEYRRQIQSL TCEVDALKGS NESLERQMRE MEENFAVEAA NYQDTIGRLQ
DEIQNMKEEM ARHLREYQDL LNVKMALDIE IATYRKLLEG EESRINMPIP TFASLNLRET
NIESQPIVDT HSKRTLLIKT VETRDGQVIN ETSQHHDDLE