VIPP1_ARATH
ID VIPP1_ARATH Reviewed; 330 AA.
AC O80796;
DT 01-MAR-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1998, sequence version 1.
DT 25-MAY-2022, entry version 124.
DE RecName: Full=Membrane-associated protein VIPP1, chloroplastic;
DE AltName: Full=Protein VESICLE-INDUCING PROTEIN IN PLASTIDS 1;
DE Flags: Precursor;
GN Name=VIPP1; OrderedLocusNames=At1g65260; ORFNames=T8F5.2;
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130712; DOI=10.1038/35048500;
RA Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
RA Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E.,
RA Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L.,
RA Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P.,
RA Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D.,
RA Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J.,
RA Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L.,
RA Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A.,
RA Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A.,
RA Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M.,
RA Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M.,
RA Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P.,
RA Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
RA Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D.,
RA Yu G., Fraser C.M., Venter J.C., Davis R.W.;
RT "Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
RL Nature 408:816-820(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP FUNCTION, DISRUPTION PHENOTYPE, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Columbia;
RX PubMed=11274447; DOI=10.1073/pnas.061500998;
RA Kroll D., Meierhoff K., Bechtold N., Kinoshita M., Westphal S.,
RA Vothknecht U.C., Soll J., Westhoff P.;
RT "VIPP1, a nuclear gene of Arabidopsis thaliana essential for thylakoid
RT membrane formation.";
RL Proc. Natl. Acad. Sci. U.S.A. 98:4238-4242(2001).
RN [5]
RP FUNCTION, SUBUNIT, AND SUBCELLULAR LOCATION.
RC STRAIN=cv. Columbia;
RX PubMed=17346982; DOI=10.1016/j.plaphy.2007.01.005;
RA Aseeva E., Ossenbuehl F., Sippel C., Cho W.K., Stein B., Eichacker L.A.,
RA Meurer J., Wanner G., Westhoff P., Soll J., Vothknecht U.C.;
RT "Vipp1 is required for basic thylakoid membrane formation but not for the
RT assembly of thylakoid protein complexes.";
RL Plant Physiol. Biochem. 45:119-128(2007).
CC -!- FUNCTION: Required for plastid vesicle formation and thylakoid membrane
CC biogenesis, but not for functional assembly of thylakoid protein
CC complexes. {ECO:0000269|PubMed:11274447, ECO:0000269|PubMed:17346982}.
CC -!- SUBUNIT: Homomultimer. Complex formation involves interaction via the
CC central alpha-helical domain (71-286). {ECO:0000269|PubMed:17346982}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast inner membrane; Peripheral
CC membrane protein. Plastid, chloroplast thylakoid membrane; Peripheral
CC membrane protein.
CC -!- DISRUPTION PHENOTYPE: Pale green and unable to grow
CC photoautotrophically on soil. {ECO:0000269|PubMed:11274447}.
CC -!- SIMILARITY: Belongs to the PspA/IM30 family. {ECO:0000305}.
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DR EMBL; AC004512; AAC27135.1; -; Genomic_DNA.
DR EMBL; CP002684; AEE34349.1; -; Genomic_DNA.
DR EMBL; AY045845; AAK76519.1; -; mRNA.
DR EMBL; AY117153; AAM51228.1; -; mRNA.
DR PIR; T02347; T02347.
DR RefSeq; NP_564846.1; NM_105199.3.
DR AlphaFoldDB; O80796; -.
DR SMR; O80796; -.
DR BioGRID; 28054; 6.
DR IntAct; O80796; 1.
DR STRING; 3702.AT1G65260.1; -.
DR iPTMnet; O80796; -.
DR MetOSite; O80796; -.
DR PaxDb; O80796; -.
DR PRIDE; O80796; -.
DR ProteomicsDB; 232986; -.
DR EnsemblPlants; AT1G65260.1; AT1G65260.1; AT1G65260.
DR GeneID; 842833; -.
DR Gramene; AT1G65260.1; AT1G65260.1; AT1G65260.
DR KEGG; ath:AT1G65260; -.
DR Araport; AT1G65260; -.
DR TAIR; locus:2206290; AT1G65260.
DR eggNOG; ENOG502QSHK; Eukaryota.
DR HOGENOM; CLU_056466_0_0_1; -.
DR InParanoid; O80796; -.
DR OrthoDB; 1460726at2759; -.
DR PhylomeDB; O80796; -.
DR PRO; PR:O80796; -.
DR Proteomes; UP000006548; Chromosome 1.
DR ExpressionAtlas; O80796; baseline and differential.
DR Genevisible; O80796; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009706; C:chloroplast inner membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0042644; C:chloroplast nucleoid; HDA:TAIR.
DR GO; GO:0009570; C:chloroplast stroma; HDA:TAIR.
DR GO; GO:0009534; C:chloroplast thylakoid; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; HDA:TAIR.
DR GO; GO:0005634; C:nucleus; HDA:TAIR.
DR GO; GO:0010027; P:thylakoid membrane organization; IMP:TAIR.
DR GO; GO:0016050; P:vesicle organization; IMP:TAIR.
DR InterPro; IPR007157; PspA_IM30.
DR PANTHER; PTHR31088; PTHR31088; 1.
DR Pfam; PF04012; PspA_IM30; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Coiled coil; Membrane; Plastid; Plastid inner membrane;
KW Reference proteome; Thylakoid; Transit peptide.
FT TRANSIT 1..64
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 65..330
FT /note="Membrane-associated protein VIPP1, chloroplastic"
FT /id="PRO_0000029848"
FT REGION 287..312
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 124..259
FT /evidence="ECO:0000255"
FT COILED 312..329
FT /evidence="ECO:0000255"
SQ SEQUENCE 330 AA; 36392 MW; 2F4C74BF2994ACF0 CRC64;
MALKASPVTG LFPPLRPTAS SSPSTSSNRP CSLRILPLRT SFFGNSSGAL RVNVLRLACD
NRLRCNGHGA TMNLFERFSR VVKSYANALI SSFEDPEKIL EQTVIEMNSD LTKMRQATAQ
VLASQKQLQN KYKAAQQSSD DWYKRAQLAL AKGDEDLARE ALKRRKSFAD NATALKTQLD
QQKGVVDNLV SNTRLLESKI QEAKAKKDTL LARARTAKTA TKVQEMIGTV NTSGALSAFE
KMEEKVMAME SEADALTQIG TDELEGKFQM LETSSVDDDL ADLKKELSGS SKKGELPPGR
STVAASTRYP FKDSEIENEL NELRRKANDF
