VIRB4_AGRFC
ID VIRB4_AGRFC Reviewed; 789 AA.
AC P17794;
DT 01-AUG-1990, integrated into UniProtKB/Swiss-Prot.
DT 27-MAR-2002, sequence version 3.
DT 03-AUG-2022, entry version 115.
DE RecName: Full=Protein virB4;
DE Flags: Precursor;
GN Name=virB4; OrderedLocusNames=Atu6170; ORFNames=AGR_pTi_8;
OS Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens
OS (strain C58)).
OG Plasmid pTiC58.
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium;
OC Agrobacterium tumefaciens complex.
OX NCBI_TaxID=176299;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2370849; DOI=10.1007/bf00261729;
RA Kuldau G.A., de Vos G., Owen J., McCaffrey G., Zambryski P.;
RT "The virB operon of Agrobacterium tumefaciens pTiC58 encodes 11 open
RT reading frames.";
RL Mol. Gen. Genet. 221:256-266(1990).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2194232; DOI=10.1016/0147-619x(90)90028-b;
RA Rogowsky P.M., Powell B.S., Shirasu K., Lin T.-S., Morel P., Zyprian E.M.,
RA Steck T.R., Kado C.I.;
RT "Molecular characterization of the vir regulon of Agrobacterium
RT tumefaciens: complete nucleotide sequence and gene organization of the
RT 28.63-kbp regulon cloned as a single unit.";
RL Plasmid 23:85-106(1990).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2233252; DOI=10.1111/j.1365-2958.1990.tb00690.x;
RA Shirasu K., Morel P., Kado C.I.;
RT "Characterization of the virB operon of an Agrobacterium tumefaciens Ti
RT plasmid: nucleotide sequence and protein analysis.";
RL Mol. Microbiol. 4:1153-1163(1990).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=11743193; DOI=10.1126/science.1066804;
RA Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K.,
RA Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y.,
RA Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P.,
RA Clendenning J., Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R.,
RA Li M.-J., McClelland E., Palmieri A., Raymond C., Rouse G.,
RA Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y.,
RA Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S.,
RA Hendrick C., Zhao Z.-Y., Dolan M., Chumley F., Tingey S.V., Tomb J.-F.,
RA Gordon M.P., Olson M.V., Nester E.W.;
RT "The genome of the natural genetic engineer Agrobacterium tumefaciens
RT C58.";
RL Science 294:2317-2323(2001).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C58 / ATCC 33970;
RX PubMed=11743194; DOI=10.1126/science.1066803;
RA Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B.,
RA Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K.,
RA Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C., Allinger M.,
RA Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C.,
RA Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S.;
RT "Genome sequence of the plant pathogen and biotechnology agent
RT Agrobacterium tumefaciens C58.";
RL Science 294:2323-2328(2001).
CC -!- FUNCTION: A possible function of virB4 might be to provide the energy,
CC via hydrolysis of ATP, for translocation of virulence proteins of the
CC transfer of a T-DNA-protein complex across the agrobacterium membrane.
CC -!- SIMILARITY: Belongs to the TrbE/VirB4 family. {ECO:0000305}.
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DR EMBL; X53264; CAA37357.1; -; Genomic_DNA.
DR EMBL; J03320; AAA91594.1; -; Genomic_DNA.
DR EMBL; AE007871; AAK90932.1; -; Genomic_DNA.
DR PIR; AH3248; AH3248.
DR PIR; S12344; B4AG58.
DR RefSeq; NP_396491.1; NC_003065.3.
DR RefSeq; WP_010974916.1; NC_003065.3.
DR AlphaFoldDB; P17794; -.
DR SMR; P17794; -.
DR EnsemblBacteria; AAK90932; AAK90932; Atu6170.
DR GeneID; 39477131; -.
DR KEGG; atu:Atu6170; -.
DR PATRIC; fig|176299.10.peg.5366; -.
DR HOGENOM; CLU_008341_3_0_5; -.
DR OMA; ITFEKDY; -.
DR PhylomeDB; P17794; -.
DR BioCyc; AGRO:ATU6170-MON; -.
DR Proteomes; UP000000813; Plasmid Ti.
DR GO; GO:0043684; C:type IV secretion system complex; IGC:PAMGO_GAT.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0030255; P:protein secretion by the type IV secretion system; IGC:PAMGO_GAT.
DR Gene3D; 3.40.50.300; -; 1.
DR InterPro; IPR004346; CagE_TrbE_VirB.
DR InterPro; IPR018145; CagE_TrbE_VirB_cntrl_dom.
DR InterPro; IPR027417; P-loop_NTPase.
DR Pfam; PF03135; CagE_TrbE_VirB; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
DR TIGRFAMs; TIGR00929; VirB4_CagE; 1.
PE 3: Inferred from homology;
KW ATP-binding; Crown gall tumor; Nucleotide-binding; Plasmid;
KW Reference proteome; Signal.
FT SIGNAL 1..38
FT /evidence="ECO:0000255"
FT CHAIN 39..789
FT /note="Protein virB4"
FT /id="PRO_0000022663"
FT BINDING 433..440
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000255"
FT CONFLICT 55
FT /note="A -> R (in Ref. 2 and 3)"
FT /evidence="ECO:0000305"
FT CONFLICT 59
FT /note="A -> R (in Ref. 1; CAA37357)"
FT /evidence="ECO:0000305"
FT CONFLICT 249
FT /note="R -> G (in Ref. 2 and 3)"
FT /evidence="ECO:0000305"
FT CONFLICT 488..489
FT /note="AP -> G (in Ref. 2 and 3)"
FT /evidence="ECO:0000305"
FT CONFLICT 527
FT /note="E -> Q (in Ref. 2 and 3)"
FT /evidence="ECO:0000305"
FT CONFLICT 613
FT /note="A -> R (in Ref. 2 and 3)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 789 AA; 87477 MW; 1409A3642445E9CB CRC64;
MLGASGTTER SGEVYLPYVG HVSDHIVLLE DGSIMTMAHV SGMAFELEDA EMRNARCRAF
NTLLRNIADD HVSIYAHLVR HDDVPPSPAR HFRSAFSASL SEAFEERVLS GKLLRNDHFL
TLIVSPRAAL GKVRRRFTKR YRQKENDLTA QTRNLEDLWH LVAGALEAYG LRRLGIREKQ
DVLFTEVGEA LRLIMTGRFT PVPVVSGSLG ASIYTDRVIC GKRGLEIRTP KDSYVGSIYS
FREYPATTRP GMLNVLLSLD FPLVLTQSFS FLTRSQAHSK LSLKSSQMLS SGDKAVTQIS
KLSEAEDALA SNEFVLGAHH VSLCIYANDL NNLADRGARA RTRLADAGAV VVQEGIGMEA
AYWSQLPGNY KWRTRPGAIT SRNFAGLVSF ENFPEGSGSG HWGNAIARFR TNGGTPFDYI
PHEHDVGMTA IFGPIGRGKT TLMTFILAML EQSMVDRAGA VVLFDKDRGS ELLVRATGGT
YLALRRGAPS GLAPLRGLEN TAASHDFLRE WIVALIESDG RGGISPEENR RLVRGIHRQL
SFDPHMRSIA GLREFLLHGP AEGAGARLQR WCRGNALGWA FDGELDEVKL DPSITGFDMT
HLLEYEEVCA AAAAYLLHRI GAMVDGRRFV MSCDEFRAYL LNPKFAAVVD KFLLTVRKNN
GMLILATQQP EHVLESQLGA SLVAQCMTKI FYPSPTADRS AYIDGLKCTE KEFQAIREDM
AVGSRKFLLK RESGSVVCEF DLREMREYVA VLSGRANTVR FADQLRKVQG DNPSAWLSEF
MARYHEAKD