VIRD3_AGRFC
ID VIRD3_AGRFC Reviewed; 673 AA.
AC P18593; P06523;
DT 01-JAN-1988, integrated into UniProtKB/Swiss-Prot.
DT 27-MAR-2002, sequence version 2.
DT 03-AUG-2022, entry version 82.
DE RecName: Full=Protein VirD3;
GN Name=virD3; OrderedLocusNames=Atu6183; ORFNames=AGR_pTi_22;
OS Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens
OS (strain C58)).
OG Plasmid pTiC58.
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium;
OC Agrobacterium tumefaciens complex.
OX NCBI_TaxID=176299;
RN [1]
RP PRELIMINARY NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2986128; DOI=10.1073/pnas.82.9.2669;
RA Hagiya M., Close T.J., Tait R.C., Kado C.I.;
RT "Identification of pTiC58 plasmid-encoded proteins for virulence in
RT Agrobacterium tumefaciens.";
RL Proc. Natl. Acad. Sci. U.S.A. 82:2669-2673(1985).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=2194232; DOI=10.1016/0147-619x(90)90028-b;
RA Rogowsky P.M., Powell B.S., Shirasu K., Lin T.-S., Morel P., Zyprian E.M.,
RA Steck T.R., Kado C.I.;
RT "Molecular characterization of the vir regulon of Agrobacterium
RT tumefaciens: complete nucleotide sequence and gene organization of the
RT 28.63-kbp regulon cloned as a single unit.";
RL Plasmid 23:85-106(1990).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=11743193; DOI=10.1126/science.1066804;
RA Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K.,
RA Zhou Y., Chen L., Wood G.E., Almeida N.F. Jr., Woo L., Chen Y.,
RA Paulsen I.T., Eisen J.A., Karp P.D., Bovee D. Sr., Chapman P.,
RA Clendenning J., Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R.,
RA Li M.-J., McClelland E., Palmieri A., Raymond C., Rouse G.,
RA Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y.,
RA Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S.,
RA Hendrick C., Zhao Z.-Y., Dolan M., Chumley F., Tingey S.V., Tomb J.-F.,
RA Gordon M.P., Olson M.V., Nester E.W.;
RT "The genome of the natural genetic engineer Agrobacterium tumefaciens
RT C58.";
RL Science 294:2317-2323(2001).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C58 / ATCC 33970;
RX PubMed=11743194; DOI=10.1126/science.1066803;
RA Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B.,
RA Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K.,
RA Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C., Allinger M.,
RA Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C.,
RA Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S.;
RT "Genome sequence of the plant pathogen and biotechnology agent
RT Agrobacterium tumefaciens C58.";
RL Science 294:2323-2328(2001).
CC -!- MISCELLANEOUS: The Ti plasmid contains at least six transcriptional
CC units, designated vir loci, which are essential for efficient crown-
CC gall tumorigenesis.
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DR EMBL; M11311; AAA98368.1; ALT_SEQ; Genomic_DNA.
DR EMBL; J03320; AAA91605.1; -; Genomic_DNA.
DR EMBL; AE007871; AAK90945.2; -; Genomic_DNA.
DR PIR; AE3250; AE3250.
DR PIR; S11840; S11840.
DR RefSeq; NP_396504.2; NC_003065.3.
DR RefSeq; WP_010974778.1; NC_003065.3.
DR AlphaFoldDB; P18593; -.
DR EnsemblBacteria; AAK90945; AAK90945; Atu6183.
DR KEGG; atu:Atu6183; -.
DR PATRIC; fig|176299.10.peg.5377; -.
DR HOGENOM; CLU_408073_0_0_5; -.
DR BioCyc; AGRO:ATU6183-MON; -.
DR Proteomes; UP000000813; Plasmid Ti.
PE 4: Predicted;
KW Crown gall tumor; Plasmid; Reference proteome.
FT CHAIN 1..673
FT /note="Protein VirD3"
FT /id="PRO_0000065862"
FT REGION 36..73
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 171..216
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 229..409
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 478..497
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 520..552
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 585..673
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 171..187
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 195..216
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 264..287
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 322..336
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 478..496
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 531..552
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 638..673
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 358..359
FT /note="AG -> GA (in Ref. 1 and 2)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 673 AA; 72605 MW; 5928C88A0A47577D CRC64;
MANEEFTRHY AWPVPVASND EGRGTARIPI QAQSIVAGED GRDTSVPTAL SRPPIEDMPH
GVQETSASGG RLGAARLRDS VIPPGISEAR TDLSAILRKK SGSFRTGMQY LRGLERENFD
KQDREASALP DLSARGIKRP REIEYPGNAS GLTIKRQDGL GIEINTISAS SPVNRAAHSS
NWQGAPEPGV YNVQPSADRA QNSAQESSTF PDGTSVSALY SGPLAEWFER DTGSETTRNS
GNTISSPLRG LEEFGDSADS RYLGREAQSL SVTVTTPNSN AEASSHSAHT ETLDDVSSDR
SSEQGRGPLG AAILGSHHDL SPRAQKLSQT NRDSPELTDA DLAKVDAVFE SLSKGPPAGE
SAAPDFRERG PGSAFQKEGV SDRANGVPTN WEVPFGRGGG HSPQALRSSG VELDDFPDFT
EAELAKIDAL VESHSNRSLS VRNIVPDLRG AGADNVFRKE GVVERAEKMP IDSVSLTRLN
GERSRSPKTS QASLEDFPDL TDADLAHIEE SERIARTAVE KGKQKISTEA DTRFDLGNSS
APRVSPRSVT PLVPNANQPI TSWFYEAQKT CDKLVENTYV KPAVDSSRAR NDVENTAARL
GDPAPALGHD NLGRTRALTP VRDVMSRPSA DRQLASHAAE HSAIDDIWKR DDRDRRTHPY
RGLDSRSREG CGR
