VIV_ORYSJ
ID VIV_ORYSJ Reviewed; 727 AA.
AC P37398; A0A0P0VBZ7; B7EMQ0; Q0JGQ2; Q5N7W1; Q5N7W2;
DT 01-OCT-1994, integrated into UniProtKB/Swiss-Prot.
DT 16-JUN-2009, sequence version 3.
DT 03-AUG-2022, entry version 137.
DE RecName: Full=B3 domain-containing protein VP1;
DE Short=OsVP1;
DE AltName: Full=Protein viviparous homolog;
GN Name=VP1; OrderedLocusNames=Os01g0911700, LOC_Os01g68370;
GN ORFNames=P0470A12.15-1, P0470A12.15-2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=8193305; DOI=10.1007/bf00029862;
RA Hattori T., Terada T., Hamasuna S.;
RT "Sequence and functional analyses of the rice gene homologous to the maize
RT Vp1.";
RL Plant Mol. Biol. 24:805-810(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP TISSUE SPECIFICITY.
RX PubMed=8673344; DOI=10.1093/oxfordjournals.pcp.a028953;
RA Nakagawa H., Ohkura E., Ohmiya K., Hattori T.;
RT "The seed-specific transcription factor VP1 (OSVP1) is expressed in rice
RT suspension-cultured cells.";
RL Plant Cell Physiol. 37:355-362(1996).
RN [8]
RP INTERACTION WITH RAD23.
RX PubMed=9225866; DOI=10.1023/a:1005870227632;
RA Schultz T.F., Quatrano R.S.;
RT "Characterization and expression of a rice RAD23 gene.";
RL Plant Mol. Biol. 34:557-562(1997).
RN [9]
RP INTERACTION WITH TRAB1.
RX PubMed=10611387; DOI=10.1073/pnas.96.26.15348;
RA Hobo T., Kowyama Y., Hattori T.;
RT "A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-
RT induced transcription.";
RL Proc. Natl. Acad. Sci. U.S.A. 96:15348-15353(1999).
RN [10]
RP SUBCELLULAR LOCATION, AND DEVELOPMENTAL STAGE.
RX PubMed=11917085; DOI=10.1093/pcp/pcf040;
RA Miyoshi K., Kagaya Y., Ogawa Y., Nagato Y., Hattori T.;
RT "Temporal and spatial expression pattern of the OSVP1 and OSEM genes during
RT seed development in rice.";
RL Plant Cell Physiol. 43:307-313(2002).
RN [11]
RP INTERACTION WITH ABI5.
RX PubMed=17604002; DOI=10.1016/j.bbrc.2007.05.226;
RA Zou M., Guan Y., Ren H., Zhang F., Chen F.;
RT "Characterization of alternative splicing products of bZIP transcription
RT factors OsABI5.";
RL Biochem. Biophys. Res. Commun. 360:307-313(2007).
CC -!- FUNCTION: Probable transcription factor that may participate in
CC abscisic acid-regulated gene expression during seed development. May be
CC required for seed maturation and dormancy induction.
CC -!- SUBUNIT: Interacts with RAD23 (PubMed:9225866). Interacts (via N-
CC terminus) with TRAB1 (PubMed:10611387). Interacts with ABI5
CC (PubMed:17604002). {ECO:0000269|PubMed:10611387,
CC ECO:0000269|PubMed:17604002, ECO:0000269|PubMed:9225866}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-ProRule:PRU00326,
CC ECO:0000269|PubMed:11917085}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=P37398-1; Sequence=Displayed;
CC Name=2;
CC IsoId=P37398-2; Sequence=VSP_019584;
CC -!- DEVELOPMENTAL STAGE: Expressed in the whole embryo from 2 to 4 days
CC after pollination (DAP). At 6 DAP, expressed in the regions where the
CC shoot and radicle are developing, and in the aleurone layers and the
CC outermost cell layers of the endosperm. Later, in the embryo
CC development, expressed in vascular tissue, coleoptile, leaf, shoot
CC meristem, radicle, scutellum and epiblast. In mature embryo (20 DAP),
CC expression levels decrease. {ECO:0000269|PubMed:11917085}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAA04066.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; D16640; BAA04066.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP003436; BAD82432.1; -; Genomic_DNA.
DR EMBL; AP003436; BAD82433.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF07076.2; -; Genomic_DNA.
DR EMBL; AP014957; BAS75841.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75842.1; -; Genomic_DNA.
DR EMBL; AK073805; BAG93647.1; -; mRNA.
DR EMBL; AK105441; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015629318.1; XM_015773832.1. [P37398-1]
DR AlphaFoldDB; P37398; -.
DR SMR; P37398; -.
DR STRING; 4530.OS01T0911700-02; -.
DR iPTMnet; P37398; -.
DR PaxDb; P37398; -.
DR PRIDE; P37398; -.
DR EnsemblPlants; Os01t0911700-01; Os01t0911700-01; Os01g0911700. [P37398-2]
DR EnsemblPlants; Os01t0911700-02; Os01t0911700-02; Os01g0911700. [P37398-1]
DR GeneID; 4324314; -.
DR Gramene; Os01t0911700-01; Os01t0911700-01; Os01g0911700. [P37398-2]
DR Gramene; Os01t0911700-02; Os01t0911700-02; Os01g0911700. [P37398-1]
DR KEGG; osa:4324314; -.
DR eggNOG; ENOG502QWRF; Eukaryota.
DR InParanoid; P37398; -.
DR OMA; GNMAWPQ; -.
DR OrthoDB; 317013at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; P37398; OS.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0009738; P:abscisic acid-activated signaling pathway; IEA:UniProtKB-KW.
DR GO; GO:0009737; P:response to abscisic acid; IEP:Gramene.
DR Gene3D; 2.40.330.10; -; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR044800; LEC2-like.
DR PANTHER; PTHR31140; PTHR31140; 1.
DR Pfam; PF02362; B3; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; SSF101936; 1.
DR PROSITE; PS50863; B3; 1.
PE 1: Evidence at protein level;
KW Abscisic acid signaling pathway; Activator; Alternative splicing;
KW Developmental protein; DNA-binding; Nucleus; Reference proteome;
KW Transcription; Transcription regulation.
FT CHAIN 1..727
FT /note="B3 domain-containing protein VP1"
FT /id="PRO_0000111529"
FT DNA_BIND 537..638
FT /note="TF-B3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00326"
FT REGION 1..38
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 64..102
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 248..282
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 395..463
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 476..527
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 643..727
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 64..85
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 420..442
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 481..503
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT VAR_SEQ 9..31
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_019584"
SQ SEQUENCE 727 AA; 75802 MW; 563C2FD5D8FF8160 CRC64;
MDASAGSSAP HSHGNPGKQG GGGGGGGGRG KAPAAEIRGE AARDDVFFAD DTFPLLPDFP
CLSSPSSSTF SSSSSSNSSS AFTTAAGGGC GGEPSEPASA ADGFGELADI DQLLDLASLS
VPWEAEQPLF PDDVGMMIED AMSGQPHQAD DCTGDGDTKA VMEAAGGGDD AGDACMEGSD
APDDLPAFFM EWLTSNREYI SADDLRSIRL RRSTIEAAAA RLGGGRQGTM QLLKLILTWV
QNHHLQKKRP RTAIDDGAAS SDPQLPSPGA NPGYEFPSGG QEMGSAAATS WMPYQAFTPP
AAYGGDAMYP GAAGPFPFQQ SCSKSSVVVS SQPFSPPTAA AAGDMHASGG GNMAWPQQFA
PFPVSSTSSY TMPSVVPPPF TAGFPGQYSG GHAMCSPRLA GVEPSSTKEA RKKRMARQRR
LSCLQQQRSQ QLNLSQIHIS GHPQEPSPRA AHSAPVTPSS AGCRSWGIWP PAAQIIQNPL
SNKPNPPPAT SKQPKPSPEK PKPKPQAAAT AGAESLQRST ASEKRQAKTD KNLRFLLQKV
LKQSDVGSLG RIVLPKEAEV HLPELKTRDG VSIPMEDIGT SQVWNMRYRF WPNNKSRMYL
LENTGDFVRS NELQEGDFIV IYSDIKSGKY LIRGVKVRRA AQEQGNSSGA VGKHKHGSPE
KPGVSSNTKA AGAEDGTGGD DSAEAAAAAA AGKADGGGCK GKSPHGVRRS RQEAAAAASM
SQMAVSI
