VME1_IBVM
ID VME1_IBVM Reviewed; 225 AA.
AC P69606; Q5I5X5; Q91GB7; Q99AS5;
DT 29-MAR-2005, integrated into UniProtKB/Swiss-Prot.
DT 29-MAR-2005, sequence version 1.
DT 25-MAY-2022, entry version 64.
DE RecName: Full=Membrane protein {ECO:0000255|HAMAP-Rule:MF_04203};
DE Short=M protein {ECO:0000255|HAMAP-Rule:MF_04203};
DE AltName: Full=E1 glycoprotein {ECO:0000255|HAMAP-Rule:MF_04203};
DE AltName: Full=Matrix glycoprotein {ECO:0000255|HAMAP-Rule:MF_04203};
DE AltName: Full=Membrane glycoprotein {ECO:0000255|HAMAP-Rule:MF_04203};
GN Name=M {ECO:0000255|HAMAP-Rule:MF_04203};
OS Avian infectious bronchitis virus (strain M41) (IBV).
OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae;
OC Gammacoronavirus; Igacovirus.
OX NCBI_TaxID=11127;
OH NCBI_TaxID=9031; Gallus gallus (Chicken).
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=11087096; DOI=10.1007/s007050070044;
RA Lee C.-W., Jackwood M.W.;
RT "Evidence of genetic diversity generated by recombination among avian
RT coronavirus IBV.";
RL Arch. Virol. 145:2135-2148(2000).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RA Cao W.S., Liao M., Ren T., Xin C.A.;
RT "Sequence analysis of matrix gene of several strains of avian infectious
RT bronchitis virus.";
RL Submitted (JAN-2001) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Brooks J.E., Rainer A.C., Parr R.L., Collisson E.W.;
RT "Comparisons of the membrane protein genes of various strains of avian
RT infectious bronchitis virus.";
RL Submitted (JUL-2000) to the EMBL/GenBank/DDBJ databases.
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RA Mondal S.P., Buckles E.L.;
RT "Avian infectious bronchitis virus strain M41.";
RL Submitted (JUN-2006) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP NUCLEOTIDE SEQUENCE [GENOMIC RNA].
RX PubMed=16934878; DOI=10.1016/j.jviromet.2006.07.018;
RA Callison S.A., Hilt D.A., Boynton T.O., Sample B.F., Robison R.,
RA Swayne D.E., Jackwood M.W.;
RT "Development and evaluation of a real-time Taqman RT-PCR assay for the
RT detection of infectious bronchitis virus from infected chickens.";
RL J. Virol. Methods 138:60-65(2006).
CC -!- FUNCTION: Component of the viral envelope that plays a central role in
CC virus morphogenesis and assembly via its interactions with other viral
CC proteins. {ECO:0000255|HAMAP-Rule:MF_04203, ECO:0000255|PROSITE-
CC ProRule:PRU01275}.
CC -!- SUBUNIT: Homomultimer. Interacts with envelope E protein in the budding
CC compartment of the host cell, which is located between endoplasmic
CC reticulum and the Golgi complex. Forms a complex with HE and S
CC proteins. Interacts with nucleocapsid N protein. This interaction
CC probably participates in RNA packaging into the virus.
CC {ECO:0000255|HAMAP-Rule:MF_04203, ECO:0000255|PROSITE-
CC ProRule:PRU01275}.
CC -!- SUBCELLULAR LOCATION: Virion membrane {ECO:0000255|HAMAP-
CC Rule:MF_04203}; Multi-pass membrane protein {ECO:0000255|HAMAP-
CC Rule:MF_04203}. Host Golgi apparatus membrane {ECO:0000255|HAMAP-
CC Rule:MF_04203}; Multi-pass membrane protein {ECO:0000255|HAMAP-
CC Rule:MF_04203}. Note=Largely embedded in the lipid bilayer.
CC {ECO:0000255|HAMAP-Rule:MF_04203}.
CC -!- SIMILARITY: Belongs to the gammacoronaviruses M protein family.
CC {ECO:0000255|HAMAP-Rule:MF_04203}.
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DR EMBL; AF363609; AAK50036.1; -; Genomic_RNA.
DR EMBL; AF343343; AAK14400.1; -; Genomic_RNA.
DR EMBL; AF286184; AAK83030.1; -; mRNA.
DR EMBL; DQ834384; ABI26427.1; -; Genomic_RNA.
DR EMBL; AY851295; AAW33790.1; -; Genomic_RNA.
DR Proteomes; UP000007642; Genome.
DR Proteomes; UP000096468; Genome.
DR GO; GO:0044178; C:host cell Golgi membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-UniRule.
DR GO; GO:0019031; C:viral envelope; IEA:UniProtKB-UniRule.
DR GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0039660; F:structural constituent of virion; IEA:UniProtKB-UniRule.
DR CDD; cd21566; gammaCoV_M; 1.
DR HAMAP; MF_04203; GAMMA_CORONA_M; 1.
DR InterPro; IPR042550; GAMMA_CORONA_M.
DR InterPro; IPR002574; M_CoV.
DR Pfam; PF01635; CoV_M; 1.
DR PROSITE; PS51927; COV_M; 1.
PE 2: Evidence at transcript level;
KW Glycoprotein; Host Golgi apparatus; Host membrane; Membrane; Transmembrane;
KW Transmembrane helix; Viral envelope protein; Viral matrix protein; Virion.
FT CHAIN 1..225
FT /note="Membrane protein"
FT /id="PRO_0000106057"
FT TOPO_DOM 1..20
FT /note="Virion surface"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04203"
FT TRANSMEM 21..41
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04203"
FT TOPO_DOM 42..51
FT /note="Intravirion"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04203"
FT TRANSMEM 52..72
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04203"
FT TOPO_DOM 73..77
FT /note="Virion surface"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04203"
FT TRANSMEM 78..98
FT /note="Helical"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04203"
FT TOPO_DOM 99..225
FT /note="Intravirion"
FT /evidence="ECO:0000255|HAMAP-Rule:MF_04203"
SQ SEQUENCE 225 AA; 25539 MW; FEAB5E27E962664F CRC64;
MSNETNCTLD FEQSVELFKE YNLFITAFLL FLTIILQYGY ATRSKFIYIL KMIVLWCFWP
LNIAVGVISC IYPPNTGGLV AAIILTVFAC LSFVGYWIQS IRLFKRCRSW WSFNPESNAV
GSILLTNGQQ CNFAIESVPM VLSPIIKNGV LYCEGQWLAK CEPDHLPKDI FVCTPDRRNI
YRMVQKYTGD QSGNKKRFAT FVYAKQSVDT GELESVATGG SSLYT
