VP13B_DICDI
ID VP13B_DICDI Reviewed; 6061 AA.
AC Q555C6; Q869R6; Q869R7;
DT 03-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT 24-MAY-2005, sequence version 1.
DT 03-AUG-2022, entry version 91.
DE RecName: Full=Intermembrane lipid transfer protein vps13B {ECO:0000250|UniProtKB:Q96RL7};
DE AltName: Full=Putative vacuolar protein sorting-associated protein 13B;
GN Name=vps13B; ORFNames=DDB_G0274917;
OS Dictyostelium discoideum (Slime mold).
OC Eukaryota; Amoebozoa; Evosea; Eumycetozoa; Dictyostelia; Dictyosteliales;
OC Dictyosteliaceae; Dictyostelium.
OX NCBI_TaxID=44689;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=12097910; DOI=10.1038/nature00847;
RA Gloeckner G., Eichinger L., Szafranski K., Pachebat J.A., Bankier A.T.,
RA Dear P.H., Lehmann R., Baumgart C., Parra G., Abril J.F., Guigo R.,
RA Kumpf K., Tunggal B., Cox E.C., Quail M.A., Platzer M., Rosenthal A.,
RA Noegel A.A.;
RT "Sequence and analysis of chromosome 2 of Dictyostelium discoideum.";
RL Nature 418:79-85(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AX4;
RX PubMed=15875012; DOI=10.1038/nature03481;
RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R.,
RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B.,
RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T.,
RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G.,
RA Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N.,
RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E.,
RA Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N.,
RA Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D.,
RA Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T.,
RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D.,
RA Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A.,
RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M.,
RA Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A.,
RA Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y.,
RA Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C.,
RA Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R.,
RA Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
RT "The genome of the social amoeba Dictyostelium discoideum.";
RL Nature 435:43-57(2005).
CC -!- FUNCTION: Mediates the transfer of lipids between membranes at
CC organelle contact sites. {ECO:0000250|UniProtKB:Q07878}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Peripheral membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the VPS13 family. {ECO:0000305}.
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DR EMBL; AAFI02000012; EAL70351.1; -; Genomic_DNA.
DR RefSeq; XP_644147.1; XM_639055.1.
DR STRING; 44689.DDB0234199; -.
DR PaxDb; Q555C6; -.
DR PRIDE; Q555C6; -.
DR EnsemblProtists; EAL70351; EAL70351; DDB_G0274917.
DR GeneID; 8619576; -.
DR KEGG; ddi:DDB_G0274917; -.
DR dictyBase; DDB_G0274917; vps13B.
DR eggNOG; KOG1809; Eukaryota.
DR HOGENOM; CLU_223023_0_0_1; -.
DR InParanoid; Q555C6; -.
DR OMA; KSMEYDE; -.
DR PRO; PR:Q555C6; -.
DR Proteomes; UP000002195; Chromosome 2.
DR GO; GO:0019898; C:extrinsic component of membrane; IBA:GO_Central.
DR GO; GO:0045053; P:protein retention in Golgi apparatus; IBA:GO_Central.
DR GO; GO:0006623; P:protein targeting to vacuole; IBA:GO_Central.
DR InterPro; IPR026847; VPS13.
DR InterPro; IPR026854; VPS13-like_N.
DR InterPro; IPR031645; VPS13_C.
DR InterPro; IPR031642; VPS13_mid_rpt.
DR InterPro; IPR031646; VPS13_N2.
DR PANTHER; PTHR16166; PTHR16166; 1.
DR Pfam; PF12624; Chorein_N; 1.
DR Pfam; PF16908; VPS13; 1.
DR Pfam; PF16909; VPS13_C; 1.
DR Pfam; PF16910; VPS13_mid_rpt; 1.
PE 3: Inferred from homology;
KW Membrane; Protein transport; Reference proteome; Transport.
FT CHAIN 1..6061
FT /note="Intermembrane lipid transfer protein vps13B"
FT /id="PRO_0000365726"
FT DOMAIN 2..115
FT /note="Chorein N-terminal"
FT /evidence="ECO:0000255"
FT REGION 590..623
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 803..828
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1386..1414
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1604..1644
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2747..2784
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 2950..2972
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3364..3401
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 3855..3876
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4011..4068
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4107..4132
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4262..4297
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4321..4442
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4601..4631
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4753..4797
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 4861..4882
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 5003..5030
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 5372..5429
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 592..610
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 804..828
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 2747..2773
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 3374..3388
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 3855..3869
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4012..4031
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4040..4057
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4601..4615
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4616..4631
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 4753..4793
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 5372..5387
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 5388..5405
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 5406..5429
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 6061 AA; 694128 MW; EA5FD755B64BCE18 CRC64;
MFESLVADII AKYIGEYIKN LSSEQLKINV FSGNVVLKNL EIKGEALQSF KLPLHVQKGI
IGTLTLKIPW TNLKSSPVIF DIDCISLYAI PQTGFDYNEE EEKKNQLELK RKKLEKFELI
RSFKEGSGAD QKTTKQDTFM TSVMTKILNN IQVKIQSFHL RYEEIKGGKV YSLGISFGSL
SAFPTDSNWG QSLNENNQQQ QQHHQSSLFK YIELTNFSIY LDSEDKKESI SKMVEKNDNQ
LFSNTLKSMI GTTQDTYSKH QYILKPITVR LKIELNRNLD MNIDIPRMKV YCQFDQVSFV
IEENQYQSIL KLLTTIGNYA QEIKYLKYRP KQRPKQDPKA WWKYVGDVVR ESIREKIQQR
SWTFIQKRRQ NRKEYIKLFK KLQNVDWMEP INEQELKQLS EMEEVHLSFE DIIYFRSLAR
RELAMETAIA DSKKGEFYSS LNRANTSVKQ GFFGSWSSWA TGNKDSTSSS SSSSSTLPRM
NIQLTKEQQA EIEKSMEYDE ITLGATIEMP PHYVVNVFEV QIDAVIFTII GNRGPSENPL
IKSYLNNINF KLQQREQGLK LELDLESFNV SDNNNKNNNS LFPYVVTSNP KYKRHQENKE
NKENQENQEN ENKNEINNNN NNKKKDNNLF HIIFESKPIN SNYDYALSLM LKSLEIIINK
QQIERLVEFA TPKENVNLFS LSSAALEEFI LLKEMTIFQL REVVNHHKTI DLFIDAKAPI
LIIPEHMYIN NNNNNNNENS DNNSSIDTNL IILDLGNFLM QSDISKKPRK SNYSIETPFI
LNEQITKLID SQTENELDDN TVDIKNSDNN NNNISDNINN NNNINNKNNI NNNKEIEEDD
LKISDLYDHY RASLSSIKVL LATHSQDWYL PDENNSKGYQ LIEEMSINLH IQSCIEPNEL
SLSMFKVSGI LPQVKVNLSD SSYLKLYHIA KTLGRIHSKT TNTTITAYNH IMDMYSNTQD
TFVQQVDAKT TEIKLSDQYK QVLSKRKIFD ARFKLEKVLV NIISNQSKLL QLRIGDLQVS
LKKKTYDYNG NLLLGSLEVE DCQETCERFN CLITSNSRLL PIIQNNNNNN NNNNNNNNNN
NNESCLQLNN NINSSSSLIS IHTEMVDRES PHYKLVDTLV DFSFGELNFN YNPKSMGKII
CFLDYCFEET FKIQEKFIDQ LGNGSTLSNL FHLQSSTPTT PLLESTSQQP LTNPLSKSTL
VNNNNNNSNN RVVYNNNNNN IIKAKASIYS LSISLNEEGR ELGRFSINQF AIEECTISGR
SLDVSGYLES ISIDSFLDHP TEGFKILTPK NPGVSMANFK YSTYDNSSSG GGGGGSIINK
NKQSLSSSSL PQVEGHQSTQ FDKEIQLYLR SIRLTVLVDF ILKTKHLIEL PFKTVKYDSL
YKYQQQQQQQ QEEEQQQKEE EQHGGEFDLQ NVSSSSPQVK VIDIIGSDQQ PIGFKPLKIN
YKVFLESPQI ILSSSDDIHS NHDRIIAELG SVDIKTTILK TNHLIKDSSS SSSSSNSGDC
GNEKEIQVQW ESIEANLYDM NIRTFKNGQY HQVLHNLSIF NRIDTVLCDG DGKYISFAKL
PNQKKINVSI KEIKIEFMDL EHSLILSLTK DVINRITSSL GNNSSNNKLV KSKSSSLSSS
TKLLPQLNND NNNNNNNTNN GTLSSSTSTL FVNTDKEHLT TSINVGIDKF QLILKLDQEK
QQQQQQKDHD NDENIIINND FVTIQLDKIS VEMESCKRND VKTLIKVDDF ILLDDRLSDN
LRFNKIVEKK KNDNGIGKDE PLINIEFINF KDNNDWESSA IIEFREARVV LSLGLILGIK
DFFLLPFVTT LPNEQQQLLL NGNSNQIEIP ILSNVLQDLK SILIESTVNN NNNNNNNGDG
SSGSKIKKSS KLKLELIAHS PQILLPVSNH SNKLVALDIN GDVKLTNSFS PTQIKSFIDS
NFYDEFDVES MFITLNGLTF NIYEITTATT TTTTTNNNYS DIKFLSSISK ESFDIKVDYS
SWDSIYTNTI EMLTCGKQPT IVDVDIFNTF SMRVNEEQYQ FFCDMIAHLL RSMDDCPKLK
LKKRNPYMLD VLLDQISLLK STNSTTTTTT ISNSLLELKV LEIFGMKVNC KFDKVLIELL
SNDGNNNDFS TLILENVLLS IDMATENRPK KMLIEGTVDQ LLVYDKRDSD KNSNGRLVLE
RYSNNNPMME FSQLMYQSNS PYFPKGQLYS SLLNFNLNHL KAIALPSFSL RVWDWVILTI
TSVFNTYTID KYNPINNNNN NNNDDDDIII NNNINNNNSN NINRMKMIVN IPLPIIVLID
ESPSLSSLSK QHCNHGKVFV EIKPKSIQIS NEFITKVSLG ILNSLGNQDN YQDVMNIYLN
EFEMNLLTHN GIAESNILKN GNLLVSMENF IQEHQDQNYQ TIELTPTSKF TIKTFTSENN
DNGILSFKFD QTQYNHFYKC INSVLKRQYE MDSKCNQIYL KPNHKLKPID MITIINLDCL
ELLLLSDDDN DGGDGLMDSS VDNVQSEIRI FNLSLENIIN SRDETMQVVG LIGNLKVIDS
VNQIVIIEPI NSNVDRFFTM FKYKTYSRSL KQRQKHLQQL LEDPSLQWDV EFEFNMKSVQ
FNLSLPNINV PLSIQPFLLS ILEKYPIETK SKVQSTLDEL SIAEQPPKMK IDINLLYSKV
LISPSGKSFT SILTNSSTNI SGYDYMVVSF DEVSMKHQPN QFIKLDDLGT IIMDLESINY
KVSSLSVEIV LVNKKPYFFL TDIDINASQR TIRNHLEIVN KLHWDGQTNQ NNQKNRNPFK
FYDQSGASNN NNDNDNDEYD EDQEEISEIY KDQELISKSK ISIHSNASQI DLHSNHFQFL
WTLYQSIGDI KLNKDQDDDD EDNQEKQNKE KKSNIIGGDK EYLLNFIEFQ LKDVKINLIN
QFNNPILNIS LSHLETYLRQ IENGSIKLDG SIHSLKILDQ RRESTLNSKY KYLLQNYGVD
GNSSHNSSGG LNNSFDLNNS GGGNNNNNNS STKSNILKFS FKPWIYKEDI DDPLFSRNNS
SNSINSIENV SITTTTPPPP PSTLPKEFKD KWDQHLIISI SNSQITPIFD LFTEIQTSFL
PSDLLNKHKE NEQDKGGKKS SRIKIDLTME SNQFILPMNF EISNYYLRNE IRKMTISNDY
QIIKYFDSSD HHHHQKESSI DSNLMFLEIT GFSIDSIMSV LIDSNLPRVN RILRDSNINI
NTRIIDWSSS SSSSKPIKIP SIDTIIDIEH MDFLFCNEEY RFMYDTFNNT LKRYYDFKFL
PLPPYKEIDY SFNELISIEN QVKCTIQSIT MNMLNRQKPN TLATSNNHNH HNSNGTIKPI
GQIFLKKLSI DMITCKQNMK LNGTINSMFI RSIKTKENKQ SLYLDILKPK YNFNENDIEI
ENKLNRNSNS DSDNEENHNN NQNNQNNIDD DDGDGDDDDD DDDSIIKFEF ISYSEPTSIK
GDKSPIKTLW DTQYSVEIGS INLVSKIATL LKIKDFIMEP MVTPFSSAPS NKPSIRDSKD
YRSKMYQRLT MKPFTLEIPQ SETSTEMVSI EFGTITMSNI YRLFHNNNIT INKQIEVLLV
DISQFTMYTQ RDILSTMVSN SPQMKLEVER LLTLEDRSLQ DFKTRAKITN FELIFSADDY
LFLYTIFTGN WMFNDEVDSS SHRTPPNPPS LPSWNGVRFV YSPLEHSEQI KVSENQFSSP
KGFINLVENR ILQSFTLSMD TFNFHMNPIV DPLAILAMNN VILDYNLYRD GIMKTSINLK
DVLLLDERNN TDCVFKEILT RKQLNNQNPK TPPHIIIDFL MDPTHNRQFT SIQLDHPMLF
VSPNSILPIL DFFTSLQQQK EKELQESQQK LQQKLQQKQQ HQQQHQQQQQ QQQQQQQQQQ
QQQQQQQQQQ QQQQQQQQPI INGDYGGIDS NNRNKKLPPH IRFYLKVTKP KLLLVEDETQ
QNTNALVMKM PIEFHFSKTS DLNQTMELHA SKCQLFRTTP FSDSNNGATS TPITNSFAFT
CIFIQFNEND QQTIQIRFQP LNVCLSYKEI LMINRLINNL SLTNYQEQLK QQQQQEKEKE
IEKERKRKSL LKNNNNISIN DNDDDDDDDD NDNDENNNEN YEFNFKNNNN EEFYDDFDEL
TDTTTTSSQR LNEQDKEEIR IQKSFRELEK KKRERKENSK SKSLVAPDRP DESMNLMHKT
RVHVEFLGRV SFTLLDESVT MKDIPFVQLN IGEFNSDYWG WEEYSFLSCD MYLKVEVFNQ
KHMAFDSLVE QFQLNVQVLQ SDDPKLKISV KSNSPCNINI SQPFIQALAN FYQNILKTNA
SNSSNNNNNN NNNGLSASTS NNLNNTMNDS NNNYNGRNAS SNELITFENV DPEEMLFNSI
SQSISNPNLT TTTTTTTTTT TTTTTSTTIN NNNNNNINQF QITTPSSSVI NSPNISGINV
GSNRSTKNSI NHKRNPSLNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNS NDNQVNFSTS
PGWKKPINSG YLHQFDCYNS LTNNIINSKT RDMRSSVDLT MLTRSGASHQ RSSHQRSHSR
ANSNTFNMEM LRSPPVLSSS PTGTSSIPNV LSSSSLNAQT LFTTEGNNQF WIVNLTGKSI
EYYVEELNFV QSYSVNDSGS GINNNNNNNN IYNIINLNNS TSSPSSSSNK VNNNYNNMDD
EEDKKISKKS LSSSTDKEIH LLRDKEKQAL ELNSVLFKTR DFRAHGSLNA HVAIRLIDQD
SGPSQWIHGV SINQIGDNFY FPPFGNKANL VVCEVGWDEK NESKIATLRS PVLIKNSSNT
PIDIQLIHTI NNNNNNNNND VNNNNTNNNN NNNNNNNNNK SNENSQDQPP SIKTQEFGPI
RIDENFYIPI DFWNYNCSIS IRPHGKDFKF DSIETLELCE SSSWPDSHIF TSTKDLINEN
NAGGSSHYSS NGSNGSFSSI SQQQQQKKTE NFYLGTMKQS GIRCDRTGLV STTLIVTPPI
IFENVLLCDI EVRIMSHSKR SKVNDTFLKN LVNNGKPATT LSPGKQMPWY SNHGNDVGMT
LSLKGLGKDQ YFHLPSYIHN SPLATKGKDN NKDNSNNNNN NNNNNNDGIE VGSGLIGGGI
DSNSFQHVSF TQEIQFVCTP EYTNTNYTLI LKIDHRFEGG CHIASIYCTN AIQNHTMIPF
LLRPSNMKLV NALTLETNGD PLMISHDKFY CYHPSAPKIP SKEFDIILGK EDIIEIQFDA
SKDQMRFQFK AIVSTGFNIF FRTRIVDIYP RFVLVNKLPI SLSYTQVNKD LAIMAKDSQL
LGPESSIPFH WFNGKEEQQL SISIGQGTSD SSWKWSGGMR IDQIGVNYIK LQHQHDDLIE
QSIKVEVRDT SESTMVYFYS NDPQNLPFHI KNETKTIISY QQKHPNSKKY TLKPNEDRYF
TWDFPSGERK LTVHYHNDGG INIGNLNNSL NNINNNNNNL NNDNNKNKNN NDKNKNNDKN
NKNNNDKNNN DNNNNNNNNN NENQNIGQDT SPIITQDINL NKIKVFKPVK LLKEEIFPIV
ESSNGTTRDL LFTTKHRVTK ELDTLEFAFD ISFENLGFSF IDDVPQELIY VAFKDFNFWT
SQSNLTETTW LIIDDIQIDN QQPDTDYPVL LWCDKKKESQ ALPFLEYSAV KMKKKNLKYY
DLIALYLNEM YIQLDDKTLL DLNNFYQKIP IHKFNGTIYV DPTSSPSSPQ QQQPQTEQPG
IIPENFYIKW LIFAEIKIYL TFGISRDGIL SNYNKMPALR LVIPSLGKSL GQLENAPLNI
NQLGVKNIFT TMNNLTQLLS SHYTKQMKRQ IHVILGSSNI FGSPLVFFNN ISTGMTEAIE
DPIMGSIQLM KRILYAAANS SSKLFGTISS GFATWSLDET YLRRRDAEEK VKAKHIAHGF
YLGSKGFAMG IIDGVFGIVE HPVRGAMQEG LLGFFKGCGK GVLGIAVKPV TGVFDFASKT
SEGIRNNTNI HPERFRLRTP RFINPREPIK EYSVDESEGN FLLKKNSDDI NKSEGNPLSS
KMEYKFHVVL PDCTLLLTSH SLICLSKKGI YRWSFPLSEI SKLVNIVAKC KLNIHLKNYR
SFGTFSQLRK KISIHCPNDS ILFQLYSKIS SCFNRSNRLE LEENVADDFG DNSIAMVSRY
N